Meup002935.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000001.1:37686880-37691183[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.5e-05 0.002 20.4 0.3 1 20 170 189 170 190 0.96
2 16 1.1e-07 1.4e-05 27.2 1.8 1 23 225 247 225 247 0.99
3 16 9.9e-06 0.0013 21.0 0.1 1 23 253 275 253 275 0.98
4 16 5.3e-06 0.0007 21.8 0.1 1 23 281 303 281 303 0.99
5 16 5.1e-06 0.00067 21.9 0.6 2 23 310 331 309 331 0.97
6 16 1e-07 1.3e-05 27.2 1.1 1 23 337 359 337 359 0.98
7 16 1.9e-07 2.5e-05 26.3 3.1 1 23 365 387 365 387 0.98
8 16 2.4e-07 3.2e-05 26.0 0.6 1 23 393 415 393 415 0.99
9 16 9.6e-06 0.0013 21.0 0.2 1 23 421 443 421 443 0.98
10 16 1.4e-07 1.8e-05 26.8 1.0 1 23 449 471 449 471 0.99
11 16 2.6e-05 0.0033 19.7 0.1 1 23 477 499 477 499 0.98
12 16 3.3e-07 4.3e-05 25.6 0.7 1 23 505 527 505 527 0.99
13 16 1.2e-06 0.00015 23.9 0.2 1 23 533 555 533 555 0.99
14 16 2.5e-06 0.00033 22.8 0.2 1 23 561 583 561 583 0.99
15 16 1.6e-07 2.1e-05 26.6 2.4 1 23 589 611 589 611 0.99
16 16 2.2e-06 0.00028 23.0 1.1 1 23 617 639 617 639 0.99

Sequence Information

Coding Sequence
ATGGAACCATTAAGAGCATCCAAAGTAAATTCCAAgtattataataaattgcacAGTTCTAGAGCCCTGACTATTCCAATTATTAGATGTGAAGTATTCAATAGAGTTATTAAAGAAGAGTTTATTGATAATACAGACCATACGAATGAGAATCATTTATTACAAACGGGacctAAATGTGAATTTGAAGAGGAAATAAACCCCAGTGATcccaaaataaaaatcgaaaaggaTTTGAACGATGGTAATGTGTTCCAAGGATCAGTTAAAAATGAGTGCCACTCTACGGAATTAAGTATTCATATGAATTCGGACAATACATCAAACCCCAGTGAtcccaaaataaaaattgaaaaggaTTTGAACGATGGTAATGAGTTCCAAGGATCAGTTAAAAATGAGTGCCACTCTACGGAATTAAGTATTCATATGAATTCGGACAATACATCAAACTtaaCATACTTCACAAAACATTCTAAGATTCAAactagcaaaataaaaaaaaggtttgtttGTGACAATTGTAAAAAGTCATATTCCACTAAATCAGATCTGATTACACACATATTGTGTTGTACGGGAGCAAAGCTCTATAAAACTGATATTTGTGATAAAGGGGTTTCTCAAGCAggtttaaaaaagaataaaagaaCACATACTGGATTAAAGTCATATAAATGTGATATCTGTGCTAAAGTGTTTACTCAatcagaaaacttaaaaaagcataaaagaACACATTCTGGTGAGAAACCATTCGTATGTGATATCTGTGATAAAGGGTTTACTGCAGCTGCAactttaaaaattcataaaagaaCACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGATAAAGGGTTTACTGCAGCTGCaagtttaaaaattcataaaagaaCACATTCTGGTGAGAAACCATTGGTATGTGATATCTGTAATAAAGGGTTTACTGCagctacaaatttaaaaaagcataaaagaACACATTCTGGTGAGAAACCATTCGTATGTGATATCTGTGATAAAGGATTTACTCAattagaaaacttaaaaaagcataaaagaACACATTCTGGTGAGAAACCATTCGTATGTGATATCTGTGAAAAAGTGTTTACTCAATCAGAACacttaaaaaagcataaaagaACACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGCTAAAGTGTTTACTCGAtcagaaaacttaaaaattcataaaagaaCACATTCTGGTGAGAAACCATTCGTATGTGATATCTGTGATAAAGGGTTTACTGCAgctgcatatttaaaaattcataaaagaaCACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGCTAAAGTGTTTACTCAatcagaaaacttaaaaaagcataaaagaACACATTCTGGTGAGAAACCATTCGTATGTGATATCTGTGATAAAGGGTTTACTGCAGCTGCAactttaaaaattcataaaagaaTACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGAAAAAGTGTTTACTCAATcagaatacttaaaaattcataaaagaaCACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGATAAAGGGTTTACTGGAgctgcaaatttaaaaatgcataaaagaACACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGATAAAGGGTTTACTGCAgctgcaaatttaaaaatgcataaaagaACACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGATAAAGGGTTTACTCAATCAGAAcacttaaaaaatcataaaagaaCACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGATAAAGCGTTTACTCATGGTGGAGgtttaaaaaagcataaaaggACACATACTGGAACCAAGCCGTGA
Protein Sequence
MEPLRASKVNSKYYNKLHSSRALTIPIIRCEVFNRVIKEEFIDNTDHTNENHLLQTGPKCEFEEEINPSDPKIKIEKDLNDGNVFQGSVKNECHSTELSIHMNSDNTSNPSDPKIKIEKDLNDGNEFQGSVKNECHSTELSIHMNSDNTSNLTYFTKHSKIQTSKIKKRFVCDNCKKSYSTKSDLITHILCCTGAKLYKTDICDKGVSQAGLKKNKRTHTGLKSYKCDICAKVFTQSENLKKHKRTHSGEKPFVCDICDKGFTAAATLKIHKRTHSGEKPYVCDICDKGFTAAASLKIHKRTHSGEKPLVCDICNKGFTAATNLKKHKRTHSGEKPFVCDICDKGFTQLENLKKHKRTHSGEKPFVCDICEKVFTQSEHLKKHKRTHSGEKPYVCDICAKVFTRSENLKIHKRTHSGEKPFVCDICDKGFTAAAYLKIHKRTHSGEKPYVCDICAKVFTQSENLKKHKRTHSGEKPFVCDICDKGFTAAATLKIHKRIHSGEKPYVCDICEKVFTQSEYLKIHKRTHSGEKPYVCDICDKGFTGAANLKMHKRTHSGEKPYVCDICDKGFTAAANLKMHKRTHSGEKPYVCDICDKGFTQSEHLKNHKRTHSGEKPYVCDICDKAFTHGGGLKKHKRTHTGTKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00942449;
90% Identity
iTF_00942449;
80% Identity
iTF_00942449;