Mcin001819.1
Basic Information
- Insect
- Macrocentrus cingulum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_002156465.1
- Location
- MVJL01006161.1:11195-14955[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.1e-115 6e-111 370.6 38.4 1 300 29 326 29 326 0.98 2 3 0.0052 1e+02 2.2 3.3 122 172 326 376 324 382 0.89 3 3 0.033 6.5e+02 -0.5 6.1 193 238 356 400 338 401 0.59
Sequence Information
- Coding Sequence
- atggagtcTACTGTAGCGGGACGTCGACGTGCCGCGACTAGACACTCGGCTGAGGATCAGGCTCTCGATCAAATTGCGAAAGAGGCAGAGGCGAGATTAGCCGCAAGACGTCAGGCCCGAGCAGAAGCTAGAGAAATTCGAATGCGAGAGTTGGAGAGACAACAGAAAGAAGCCGAGGAGAATGCAGATCGGGTTTACGACATGTGTaataCTGACGGTTCGAGAAATATGAGAGTCACACCCGATCCAGTGAGAACGTCACGTCTTTTGAcgaattctaataattttcaatcaagtcGAAGGTCTTCCGAAGATTCCTTAGAGGACGCCGGCCTAAATAGGGATTTAAgattagaACTAAAAGAATACgaggaaaaatttagaaaagcAATGATTGCCAATGCTCAgttagataatgaaaaatcatcgtATGCATACCAAGTGGATTTACTAAAAGATAAATTAGAGGAATTGGAGGAATCATCGGCAACATTGCGACGTGAACtcagggaaaaaaatcgtgaggCAGAGCAATTAAAACGTGAGAATCAACGTTTAAAAGATGATTTGGAGTCATTCAAGAGACAACTATTAGAGAGAGATACATTGATTGAgGAAAATGGACTTGTTATTGTGGAAGATGAGGGAAGTGAGGACGAAGACACTGGAAAAGTAAATGGAATAATTCACAGAAAGCGAGTGCTAGTCAGTACAGAAGCTGCGGAATTGTTACAAAATGCCGGCGAGGGTTCACTCGATGTTCGATTGAGGAAGTTTGCCTCGgagaaaaaagaattgaaGGATGAAATACGTCACCTAAGATTAGAATTGGAGGAATCAAAGAGTCGTATGCGATCTGAAAGGTCGTCGGGATCAGTATTAGGATTCTCAGACTCTGAAGATGTTCAAAGGGAGGCCAATAAACTCCTGGCCGActacaaatttaaattacaaaaaaccgAGCAGGATATGTCAACGTTGCAGGCGACGGTTGCCCGACTAGAGAGTCAAGTTATTCGCTATAAATCGGCAGCTGAAGCCTCGGAAAAGGCTGAGGATGAATTAAAAGTTGAGAAACGTAAATTACAGCGAGAaGTGAGAGAGTCGCAAAGTCGTGTAGAAGAGTTGGAAACTGCAAATTCGCATCTTCAGAGACGATTGGATAAACTGAAGAATGCCAAGTCTGCGCTTCTCAAAGAGCTCTGA
- Protein Sequence
- MESTVAGRRRAATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCNTDGSRNMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLNRDLRLELKEYEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEESSATLRRELREKNREAEQLKRENQRLKDDLESFKRQLLERDTLIEENGLVIVEDEGSEDEDTGKVNGIIHRKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELKDEIRHLRLELEESKSRMRSERSSGSVLGFSDSEDVQREANKLLADYKFKLQKTEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00687172;
- 80% Identity
- -