Mrus034682.1
Basic Information
- Insect
- Machimus rusticus
- Gene Symbol
- -
- Assembly
- GCA_951509405.1
- Location
- OX608053.1:34590184-34596105[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.35 65 5.5 2.1 1 23 882 905 882 905 0.94 2 13 2.5 4.6e+02 2.8 2.5 1 23 1000 1022 1000 1022 0.92 3 13 0.0015 0.28 12.9 2.6 2 23 1025 1046 1025 1046 0.97 4 13 2.4e-05 0.0045 18.6 0.2 1 23 1052 1074 1052 1074 0.97 5 13 0.00014 0.026 16.2 8.4 2 23 1081 1103 1080 1103 0.96 6 13 3.1 5.8e+02 2.5 0.4 5 23 1116 1134 1113 1134 0.95 7 13 0.0077 1.4 10.7 4.2 3 23 1141 1162 1139 1162 0.95 8 13 0.0037 0.69 11.7 0.1 2 23 1173 1193 1173 1193 0.97 9 13 4.4e-05 0.0083 17.7 0.8 1 19 1199 1217 1199 1221 0.95 10 13 0.00019 0.036 15.8 0.3 1 23 1229 1251 1229 1251 0.98 11 13 0.00022 0.042 15.5 7.2 1 23 1257 1279 1257 1280 0.96 12 13 0.0027 0.5 12.1 4.0 3 23 1287 1307 1285 1307 0.98 13 13 0.008 1.5 10.6 5.6 1 23 1313 1335 1313 1336 0.93
Sequence Information
- Coding Sequence
- ATGGGTGAACAAATTCCCTGCCCGGTGTGCACACTTTTCCTGCACCCAGGAATGGAATTAGCGGATCACTTGGAGACTCACCCGAAAGAACAAGTCATAAAAGCTTTGTGCTCCCTTGCATCGGGGAGGCAGCCGAGCAAACCCCCAGCACCGGCGGCACAAGTACCACAACGAAGCCATCTACCTTCCATTCAGGGTGCTCCCGACGGAGGCCTACTGACCCCCAACGAGCCCCAGAGACTCATGGCTCCAAGTCAACACAATGTGATGATCGTCAATAGCCAGAGCACCATGGTCTATCAGAGCAGCGAATCTGCTCATCATCGGATGATACCGCAAGTAATCCAGCTCACACCACCTCCGCTGCGAcTCTTTAGCGCTTCACGACCAAGTGCTGTGAAATTTCTTCCACCGCCTCCAGCATACGGGGCAGCAATAAATCAGATTAGATCGCAGGGcactcaaaatatttgtagtcAGTTTAATCAGTTATCAAccaatgaaaattcaaattattatacGCCGAATCAAAATAGTTTCGAACATTCGTTCAACAGCAACAGCAATAGTAGCACTAGTCCACGCCTCCCGATGGCACCTCGAAATTCGTCTCCAAGGCCGAGTTCTTCACCGTCGGTTCTTCGTTTCGCCGAAAGCCCAGTCACTGCTCATTACGTTGAACGGGAGAATGGTGACTTTATAGTTCAAGAAACTCCCCGGCATATTGTTGAATGCGTCGAAAAGGACGATGGGGAGTTTTCTGTTATagaaaaagtgataaaatcaCCACCTAGTCTGGTTCACTTTCAAGAGAATGATAATGATGTAGACTTTGGCAGTACTGAGAACGTTGATTCAGTTACGAATGAAGCGACTGCTGAAGTAGAAAGTGATGTGGGTAGTGACGAAAAAGAGGAAGCTCTCAGCAATGTGAAGGTCATAAGTAATGTTAAACTTGCCCCAAAAGAGTCCTTGGGGCTGATGGAAAATATAATGGCAACCACACCTGGTGTGGAGTTACTTTGGACTGGGCTAGTTGAATCAGTATCAGATGAAATCAAAAAGGAGATCAAGATTGTGGAGGAATCATCTGAATCGTCAGGGCCCAAGTGTGAGGTAGCAACTGAGGGTGCACCTTTtgtagaaaaagaaaaggaaactGTTGAGAATCCACAACCATCTTCTTCAGCTGCAACAAGTGTTATTCGAATGGCTTCAATGCAGAAGTGTCCAAaccttaaagaaattataccAAACAGGCTAATCAAGGTCGAAAAGACGACACAGTCGGGTTTTAGTCGAGACTTAGGCAAAAGCCCTTTTAAAAAGGCACCGAAGAAGCTTGtagtaaaattcaaaaatccaCCGCAAGTAGGGAATGTTGAAACTCAAAATAGGAAAGCTTCTAGTCCACAGCCAGGCTCTTCGCAATCTCAGGAAAATTATTCGTTAAGCTCAGGTAACAACACAGTAGAAAATGAGAAGAAAAATGAAGCTATTGAAGATGTGAAGGATAAAATGCATGAGATAACTGAGGATGCGAAGAAGGAACTATCTGTTGTAGATTATGAAGCGAGCACAATCCTTGCAGAATTTGAAGTTCAAATGCCTACAGAAAGCGAAAATCAAGAAGTGGCAAATAGTAACGAAAGAAGTAGCAAAAAAGCCAATTCAGATACGCATGCAATAGATTCAAAAACACTACAAAAATTGGTTGAGAAGGCAGATGAAATGGCTCTAGATGCCTCAAATATGCCCTTGGTAATTGTTCATGAACCCACAACACTGGACGAACCTCCGGTGCCAAATGTATTCGAATCGAGACCGTTTCAAAAACTTTCCGATACAGCAAgcacaaatgaaaataatttcacgaGGGCATTGGACGAATGCATGGACAACAACCATGAGGATTCTTATTCCGTTCATCTATCTGCCGTAGAATCAGTTGAAGACTGTCCCGGAAATAGTGTTGCTCAGCAGCCAGGACGGAGTGAGCCAGTTACATTGAATTCATTTCCTTCGACATCTTTCTCGAAACCTTCAGCTAGTTCCTTTGCTGCTTTACGTGAACAGACTGATTTCCAAAATTCCCATAGCTATAATGATTATCCGTTTAGCTTTTTGTACACGAATAATATGGATAAAGGCTGCTTGTCTCCCATCTATCCCTCCGATGATCAATCGTGGCAAAGGTATGGCGGACCAACATTTCAGCAGACTGCACCGATGCAACTTCCGGATATAGATTCGGAAAGAAGCAGTTACATAGATCTAGATGCATGCAAGAAAAACACTAGTACTGACACAGTTCCTTCTGTCGATGCTTTGAACATTCGTACCGATGAAAAGATGCCTGCTAAGGGTGAAATATCAGAGCAGGAAAGCAATGGGGAAATTGATCTCTCATGGAGTCAAGCGTTGTATAATGAGACCCAGCGGCAAAACAATCAAATAGAGAACTATGGAACGAGGGAGAGCGGAAGTTTTAGTAACGAAGAATTCTTTTTCAGCCCGCAAAACTTAACCACCGATACAAAGCCGTCGATTAAATCAACCGAGACTACAGTAGAGGAAAAGCCAGAGCCACTTTTAACTAAAGGGAAGGAGAAAAAGTGTTCTACCGTAAAAAAGCGGAAAACATTTCAGTGTGACCACTGCTTATCAGTATTTTCTAAGTTAAAAGACCGAAATTCTCATTTGCTCGAAAGTCACAGCTATAAGAGAGTTAATCGTCGCTTAATACGTGAACTACCTCCGGCTACTGTAACAACTGGCCAAACAGAAGCACAAAACCCAGCTGAGACTGATGATACCATTGACATCAAAAAGCCTGAACTGACTGCAATTGCATCGATCGAGTCTTCCCATCTTCCTAGGACTAAATATGATGCTATTCGTGCTGGAGTGTATCGAATGCTaatgaactttaatttaagtgtTTTACAGCAGAATCAGAATGTGGATGTGGACAAGGCGTTGTTCGATACAAAATCCTTCTGCTGTTACACATGCAAAAGGGATTTTATTAGTGTTAAGTCGTTTGATGAACATTTGGCAGATCATCCGGCGGAATGTTTCACATGCAGTAAGAAGTTTACTCGATGGATGTACTTTTCAATCCATTTAAAGAGACACTTGGGTTGGAAAGATTTCGCTTGTACGGTGTGCAGTAAAAAGTTCGTTATTCGCAGTGCTCTGATAGAACATATGCGCATGCACACTGGAGTTACACCTTTAAAGTGTAAGTTTTGCGATAAACACTTCAAAAGGTATTCAAATTTAACGCAGCACAAAAGGGTATGCCATCAAACCAAAAGTTCGAAGAAAAAGGATTACGTGTGCCATTGCGGAGAAGTTTTACCTTCGAAAGCTCGATTCCTTTGGCATAAGGAAACGCATGATACAAAACCAAAATGTTGTCCCTACTGCAGGGATAGATTTATACATTCTAACAGTCTCCGGCGGCACATTCGACTAGCGCATTCGGACAAATTCTCTTATACAGAGCCAGCAGAATGTCCTGTATGCAATCAGGTGTACGCAAAAACTAGTCTTAAGGCGCACATGAGCACACACTCGATGGACACTCAGCATGAGTGTGTGATCTGCAACAAGTCATTTAGTACCAAATGGAATTTGAAAATCCACAGCTGGGTGCACGCTAGCAGAACAGCAAAGCCGTTCAAATGTGATTTATGCGTGAAGGCCTTTGTAAGGGAGATAGATTACAAGAACCACATGAATGCTCACAAGCAAATAAAGCCGTACACCTGTGAGTATTGCGGTTGCAAGTTCATAAGGAAGTACAATTATATGCGTCACAGTCGAGAGCATCATGGCCAGAAAAAGTTTGGCTGCGATCTCTGCGGGAAGCTATTCCACAGACACTATTATTTGATAGAGCACAGACGTACCCACACCGGAGAGCGGCCCTTCCTCTGCACGATCTGCGGCAAGAGTTCAACGACAAAAACTAATCACAACAAGCACCTTAAGATTCACCACTCTCGTGACCCCTTTACGACGGAAGCATAA
- Protein Sequence
- MGEQIPCPVCTLFLHPGMELADHLETHPKEQVIKALCSLASGRQPSKPPAPAAQVPQRSHLPSIQGAPDGGLLTPNEPQRLMAPSQHNVMIVNSQSTMVYQSSESAHHRMIPQVIQLTPPPLRLFSASRPSAVKFLPPPPAYGAAINQIRSQGTQNICSQFNQLSTNENSNYYTPNQNSFEHSFNSNSNSSTSPRLPMAPRNSSPRPSSSPSVLRFAESPVTAHYVERENGDFIVQETPRHIVECVEKDDGEFSVIEKVIKSPPSLVHFQENDNDVDFGSTENVDSVTNEATAEVESDVGSDEKEEALSNVKVISNVKLAPKESLGLMENIMATTPGVELLWTGLVESVSDEIKKEIKIVEESSESSGPKCEVATEGAPFVEKEKETVENPQPSSSAATSVIRMASMQKCPNLKEIIPNRLIKVEKTTQSGFSRDLGKSPFKKAPKKLVVKFKNPPQVGNVETQNRKASSPQPGSSQSQENYSLSSGNNTVENEKKNEAIEDVKDKMHEITEDAKKELSVVDYEASTILAEFEVQMPTESENQEVANSNERSSKKANSDTHAIDSKTLQKLVEKADEMALDASNMPLVIVHEPTTLDEPPVPNVFESRPFQKLSDTASTNENNFTRALDECMDNNHEDSYSVHLSAVESVEDCPGNSVAQQPGRSEPVTLNSFPSTSFSKPSASSFAALREQTDFQNSHSYNDYPFSFLYTNNMDKGCLSPIYPSDDQSWQRYGGPTFQQTAPMQLPDIDSERSSYIDLDACKKNTSTDTVPSVDALNIRTDEKMPAKGEISEQESNGEIDLSWSQALYNETQRQNNQIENYGTRESGSFSNEEFFFSPQNLTTDTKPSIKSTETTVEEKPEPLLTKGKEKKCSTVKKRKTFQCDHCLSVFSKLKDRNSHLLESHSYKRVNRRLIRELPPATVTTGQTEAQNPAETDDTIDIKKPELTAIASIESSHLPRTKYDAIRAGVYRMLMNFNLSVLQQNQNVDVDKALFDTKSFCCYTCKRDFISVKSFDEHLADHPAECFTCSKKFTRWMYFSIHLKRHLGWKDFACTVCSKKFVIRSALIEHMRMHTGVTPLKCKFCDKHFKRYSNLTQHKRVCHQTKSSKKKDYVCHCGEVLPSKARFLWHKETHDTKPKCCPYCRDRFIHSNSLRRHIRLAHSDKFSYTEPAECPVCNQVYAKTSLKAHMSTHSMDTQHECVICNKSFSTKWNLKIHSWVHASRTAKPFKCDLCVKAFVREIDYKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHSREHHGQKKFGCDLCGKLFHRHYYLIEHRRTHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTTEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628636;
- 90% Identity
- iTF_01184065; iTF_01461410; iTF_00936807; iTF_00718038;
- 80% Identity
- -