Matr029178.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- -
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000232.1:273446-280419[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.29 54 5.5 2.1 1 23 878 901 878 901 0.94 2 13 1.5 2.8e+02 3.3 2.4 1 23 996 1018 996 1018 0.94 3 13 0.00031 0.056 14.9 2.2 2 23 1021 1042 1021 1042 0.97 4 13 2.1e-05 0.0038 18.6 0.2 1 23 1048 1070 1048 1070 0.97 5 13 0.00012 0.022 16.2 8.4 2 23 1077 1099 1076 1099 0.96 6 13 2.1 3.9e+02 2.8 0.5 5 23 1112 1130 1109 1130 0.96 7 13 0.0066 1.2 10.7 4.2 3 23 1137 1158 1135 1158 0.95 8 13 0.0032 0.58 11.7 0.1 2 23 1169 1189 1169 1189 0.97 9 13 3.8e-05 0.007 17.7 0.8 1 19 1195 1213 1195 1217 0.95 10 13 0.00016 0.03 15.8 0.3 1 23 1225 1247 1225 1247 0.98 11 13 0.00041 0.075 14.5 7.1 1 23 1253 1275 1253 1276 0.95 12 13 0.0023 0.42 12.1 4.0 3 23 1283 1303 1281 1303 0.98 13 13 0.0068 1.3 10.6 5.6 1 23 1309 1331 1309 1332 0.93
Sequence Information
- Coding Sequence
- ATGGGTGAACAAATTCCCTGCCCGGTGTGCACACTTTACCTGCATCCGGGAATGGAATTGGCGGATCATTTGGAGACTCACCCAAAAGAACAAGTCATAAAAGCTCTATGCTTCCTTGCATCGGGAAGGCAGCCGAACAAGTCCCTAGCATCGGCGACACAAGTACCACAACGAAGCCATCTACCTTCCATTCAGGGTGCTCCTGACGGAGGCCTACTAAACCCCAGCGAGCCCCCGAGGCTCCTGGCGGCCCCAAGTCAGCACAATGTGATGATCGTCAATAGCCAGAGCACCATGGTCTATCAGagcagcgaatctgctcatcatcggatgatgccgcaagtaatccagctcacacCACCTCCGCTTCGACTCTTTAGCTCTCCACGACCAAGTGCTGTAAAATTTCTTCCACCGCCTCCAGCATACGGAACAGCGATAAGTCAAATTAGATCGCAGAACACCCAAAACATTTGTAGCCAGTTTAATCAGTTATCAACCAATGAAAATCCAAATTATTATGCGCCACATCAAAATAGTTTCGAACATTCGTTCAACAGCAACACCAATAGTAGCATTAGTCCACGCCTCCAGATGGTACCTAGAAATTCGTCTCCAAGGCCGAGTTCTTCACCGTCGGTTCTTCGTTTTGCCGAAAGTCCAGTCACTGCCCATTATGTTGAACGGGATAATGGTGACTTTATAGTTCAAGAATCTCCCCGGCATGTTGTTGAATGCGTCGAAAAGGACGATGGGGAGTTTTCTGTTATAGAAAAAGTGATAAAATCGCCACCTAGTTTGGTTCACTTTCAAGAGAATGATAACGATGTGGACTTTGGCAGTACTGAGAACGTTGATTCAATTCCGAATGAAGCTACTGCTGAGGTAGAAGCTGATGAGGGTAGTGTGGATAAAGAGGAAGCTTTCAGCAATGTAAAGGTCATAAGTAATGTTAAACTTGCCCCGAAGGAATCTTTGGGTTTGATGGAGAATATAATGGCAGCCACTCCTGGTGTGGAATTACTTTGGACTGGATTAGTGGAATCAGTATCAGATGGAATCAAAAAGGAGGAAAAGTTTGTAGAAGCATCGTCTGAGTCGTCAGAGCCCAAGTGTGAGGCGACAACTGCACCTTTGGTAGAAAAGGAAGTTGTTGAAAATCCACAACCATCTTCCTCAGCTGCAACAAGTGTTATTCGAATGGCTTCAGTACAGAAGAGTTTAAGCCCTAAAGAAATTATTCCACATAGGCAAATCAAAGTCGAAAGGACGGCACAATCGGGCTTCAATCGAGACATAGGCAAACGTCCTTTCAAAAAGACACCGAAGAAGCTTGTAGTAAAATTCAAAAATCCACCGCAAGTAGGGAATGCTGAAACTCAAAATAGAAAAGCTTCTAGTCCACAGCCAGGATCATCGCAATCTCGGGAAAATTATTCGTTAAGCTCAAGTAACAGCACAGTGGAGACCGGAAAGAAGAGTGAAACTATTGAACATGTGAAGGATAAAATGGATAAGATAACAGCGGATGCGAAGAAGGAGCTAAATTTTGTAGATGATGAAGCGAGTACAATCCTTGCAGAATTTGAAGTTCAAATGCCTACCGAAGGCGTAAATCAAGAAGTGGCAAGTACTGAAAGAAGTAGTAAACAAGCCAATTCAACTACGCATGCAATAGACTCAAAAACACTACTTAAACTAGCTGAAAAGGCAGATGAAATGGCTTTAGATGCCTCAAATATGCCCTTAGTAATTGTTCATGAACCCACAACACTGGACGAACCTCCGGTGCCAAATGTATTTGAATCGAGACCGTTTCAAAAACTCTCTGATAACGCAAGCACAAATGAAAATAATTTCACGAGTACATTGGACGAATGCATAAATAACAACAATGAAAATTCTTATTCAGTTCGCGTATCTACAGTAGAATCAGTTGAAGACTGTCCCTTAAATAATGTTGATAAGGAGCCAAAACGGAGTGAGCCAGTTACAGTAAATTCATTTCCTTCGACATCTTTTTCAAAACCTTCAGCTAGTTCCTTTGCTGCTTTACGTGAACAGACTGATTTCCAAAATTCCCATAGCTATAATGATTATCCGTTTAGCTTTTTGTACACGAATAATATGGATAAAGGCGGCTTGTCTCCCATCTATCCCTCCGATGATCAAGCGTGGCAAAGGTATGCCGGACCAACATTTCAGCAGACTGCACCGATGCAAATTCCGGATATAGATTCGGAAAGAAGCAGCTACATAGATCTAGATGCATGTAAGAAAAATACTAGTACTGACACAGTTCCTTCTGTCGATGCTTTAAACATTCGTACCGATGAAAAGATGCCTGCTAAGGGTGAAATATCAGAGCAGGAAAGCAATGGGGAAATTGATCTCTCATGGAGTCAAGCGTTATATAACGATACCCAGCGGCAGAACAATCAAATAGAAAACTATGGGACGAGGGAGAGCGGAAGTTTTAGCAACCAAGAATTCTTTTTCAGCCCGCAAAACTTAACCACCGATACAAAGCCGTCGATTAAATCAAACGAGACTACAGTAGAGGAAAAGCCACAGCCACTTTTAACTAAAGGGAAGGAGAAAAAGTGTTCTATTATAAAAAAACGGAAAACATTTCAGTGTGATCACTGCTTATCAGTATTTTCTAAGTTAAAAGATCGCAATTCTCATTTGCTCGAAAGTCACAGCTATAAGAGAGTTAATCGTCGTTTAATACGTGAACTACCTCCGGCTACTGTAACAACTAGCCAAACAGAAGCACAAAATCCAGCTGAGACTGATGATACCATTGACATCAAAAAGCCTGAACTGACTGCAATTGCATCGATCGAGTCATCCCATCTTCCTAGAACTAAATATGATGCTATTCGTGCTGGAGTCTATCGAATGCTAATGAACTTTAATTTAAGTGTTTTACAGCAGAATCAAAATGTGGATGTGGACAAGGCATTGTTCGATTCAAAATCATTCTGCTGTTACACGTGTAAAAGGGATTTTATTAGTGTTAAGTCGTTTGATGAGCATTTAGCAGAACATCCGGCGGAATGTTTCACGTGCACTAAGAAATTTACTCGATGGATGTACCTTTCAATCCACTTAAAGAGACATTTGGGTTGGAAAGATTTCGCTTGTACAGTGTGCAGCAAAAAGTTCGTTATTCGCAGTGCTCTAATAGAACATATGCGTATGCACACTGGAGTTACACCTTTAAAGTGTAAATTTTGCGATAAACATTTCAAAAGGTATTCAAATTTAACGCAACATAAAAGGGTATGCCATCAAACCAAAAGTTCGAAGAAAAAGGATTATGTGTGCCATTGCGGTGAGGTTTTACCTTCGAAGGCTCGTTTCTTTTGGCATAAGGAGACGCATGACACAAAACCAAAATGTTGTCCCTATTGCAGGGATAGATTTATACATTCGAACAGTCTCCGACGACACATTCGACTAGCGCATTCGGACAAATTCTCATATACAGAGCCAGCAGAATGTCCTGTATGTAATCAGGTGTACGCAAAAACTAGTcttaaggcgcacatgagcacacactcgatggacacccagcatgagtgtgtgatctgcaacaagtcatttagtaccaaatggaatttgaaaattcacagctgggtgcacgctagcagaacagcgaaaccgttcaaatgtgatttatgcgtaaaggcttttgtaagagagatcgattacaaaaaccacatgaatgctcacaagcaaataaagccgttcacctgcgagtattgcggttgcaagtttataaggaagtacaattatttgcgccacagtcgagagcatcatggccagaaaaagtttggctgcgatctctgcggcaaattattccacagacactattatttaatagagcacagacggacccacaccggagagcgacccttcctctgcacgatctgcggcaagagttcaacgacaaaaactaatcacaacaagcaccttaagattcatcactcTCGTGACCCCTTTACGACGGAAGCATAA
- Protein Sequence
- MGEQIPCPVCTLYLHPGMELADHLETHPKEQVIKALCFLASGRQPNKSLASATQVPQRSHLPSIQGAPDGGLLNPSEPPRLLAAPSQHNVMIVNSQSTMVYQSSESAHHRMMPQVIQLTPPPLRLFSSPRPSAVKFLPPPPAYGTAISQIRSQNTQNICSQFNQLSTNENPNYYAPHQNSFEHSFNSNTNSSISPRLQMVPRNSSPRPSSSPSVLRFAESPVTAHYVERDNGDFIVQESPRHVVECVEKDDGEFSVIEKVIKSPPSLVHFQENDNDVDFGSTENVDSIPNEATAEVEADEGSVDKEEAFSNVKVISNVKLAPKESLGLMENIMAATPGVELLWTGLVESVSDGIKKEEKFVEASSESSEPKCEATTAPLVEKEVVENPQPSSSAATSVIRMASVQKSLSPKEIIPHRQIKVERTAQSGFNRDIGKRPFKKTPKKLVVKFKNPPQVGNAETQNRKASSPQPGSSQSRENYSLSSSNSTVETGKKSETIEHVKDKMDKITADAKKELNFVDDEASTILAEFEVQMPTEGVNQEVASTERSSKQANSTTHAIDSKTLLKLAEKADEMALDASNMPLVIVHEPTTLDEPPVPNVFESRPFQKLSDNASTNENNFTSTLDECINNNNENSYSVRVSTVESVEDCPLNNVDKEPKRSEPVTVNSFPSTSFSKPSASSFAALREQTDFQNSHSYNDYPFSFLYTNNMDKGGLSPIYPSDDQAWQRYAGPTFQQTAPMQIPDIDSERSSYIDLDACKKNTSTDTVPSVDALNIRTDEKMPAKGEISEQESNGEIDLSWSQALYNDTQRQNNQIENYGTRESGSFSNQEFFFSPQNLTTDTKPSIKSNETTVEEKPQPLLTKGKEKKCSIIKKRKTFQCDHCLSVFSKLKDRNSHLLESHSYKRVNRRLIRELPPATVTTSQTEAQNPAETDDTIDIKKPELTAIASIESSHLPRTKYDAIRAGVYRMLMNFNLSVLQQNQNVDVDKALFDSKSFCCYTCKRDFISVKSFDEHLAEHPAECFTCTKKFTRWMYLSIHLKRHLGWKDFACTVCSKKFVIRSALIEHMRMHTGVTPLKCKFCDKHFKRYSNLTQHKRVCHQTKSSKKKDYVCHCGEVLPSKARFFWHKETHDTKPKCCPYCRDRFIHSNSLRRHIRLAHSDKFSYTEPAECPVCNQVYAKTSLKAHMSTHSMDTQHECVICNKSFSTKWNLKIHSWVHASRTAKPFKCDLCVKAFVREIDYKNHMNAHKQIKPFTCEYCGCKFIRKYNYLRHSREHHGQKKFGCDLCGKLFHRHYYLIEHRRTHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTTEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628636;
- 90% Identity
- iTF_00937554;
- 80% Identity
- -