Tcin037760.1
Basic Information
- Insect
- Tolmerus cingulatus
- Gene Symbol
- -
- Assembly
- GCA_959613345.1
- Location
- OY390711.1:3941285-3946750[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.36 71 5.5 2.1 1 23 869 892 869 892 0.94 2 13 1.9 3.7e+02 3.3 2.4 1 23 987 1009 987 1009 0.94 3 13 0.0016 0.31 12.9 2.6 2 23 1012 1033 1012 1033 0.97 4 13 2.5e-05 0.0049 18.6 0.2 1 23 1039 1061 1039 1061 0.97 5 13 0.00015 0.029 16.2 8.4 2 23 1068 1090 1067 1090 0.96 6 13 3.3 6.4e+02 2.5 0.4 5 23 1103 1121 1100 1121 0.95 7 13 0.0081 1.6 10.7 4.2 3 23 1128 1149 1126 1149 0.95 8 13 0.0039 0.76 11.7 0.1 2 23 1160 1180 1160 1180 0.97 9 13 4.7e-05 0.0091 17.8 0.8 1 19 1186 1204 1186 1208 0.95 10 13 0.0002 0.039 15.8 0.3 1 23 1216 1238 1216 1238 0.98 11 13 0.00023 0.046 15.5 7.2 1 23 1244 1266 1244 1267 0.96 12 13 0.0028 0.55 12.1 4.0 3 23 1274 1294 1272 1294 0.98 13 13 0.0084 1.6 10.7 5.6 1 23 1300 1322 1300 1323 0.93
Sequence Information
- Coding Sequence
- ATGGGTGAACATATTCCCTGCCCGGTGTGCACACTTTTCCTGCACCCGGGAATGGAACTGGCGGATCACTTGGAGACTCACCCGAAAGAGCAAGTCATAAAAGCTCTATGCTCCCTTGCATCGGGGAGGCAGCCGAGCAAACCCCCAGCACCGGCACAACTATCACAACGAAGCCACCTACCCTCCGTTCAGGGGCCCCCGGACGGAGGCCTACTGACCTCCAGCGAGCGCCCGCGGCTGTTGGCCCCAAGTCAGCACAATGTGATGATCGTCAACAGCCAGAGCACCATGGTCTATCAGAGCAGCGAATCTGCTCATCATCGGATGATACCGCAAGTAATCCAGCTGCCACCACCTCCGCTGCGActCTTTAGCGCTGCTCGACCAAATGCTGTGAAATTTCTTCCACCACCTCCAGCATACGGGACAGCAATAAGTCAAATTAGGTCGCAGAATACCCAAAACATTTGTAGCCAGTTTAATCAATTATCAACCAATGAAAATCCAAACTATTATACGATGAATCAAAATAGTTTCGAACATTCATTCAACAGTAACAGCAATAGCAGCACTAGTCCACGCCTCTCGATGGCACCTAGGAATTCATCTCCAAGGCCGAGTTCTTCACCTTCGGTCCTTCGTTTCGCCGAGAGCCCAGTCACTGCTCATTATGTTGAACGGGAGAATGGTGACTTTATAGTTCAAGAAACTCCCCGGCATATTGTTGAATGCGTCGAAAAGGACGATGGGGAGTTTTCTGTTAtagaaaaagtaataaaatcacCACCTAGTCTGGTCCACTTCCAAGAGAATGATAACGATGTAGACTTTGGCAGTACTGAGAATGTTGATTCAATTTCGAATGAAGTTACTCCTGAGGTAGAAAGTGATGTGAGTAATGAGGGTAAAGAGGAAGCTTTCAGCAATGTGAAGGTCATAAGTAATGTTAAACTTGCCCCGAAGGAGTCCTTGGGACTGATGGAGAATATAATGGCAGCCACACCTGGTGTGGAGTTACTTTGGACTGGACTAGTTGAATCAGTATCAGATGGAATTAAAAAGGAGGACAAGATTGTGGACGAATCATCTGAGTCGTCAGAGCCCAAGTGTGTGGCAACAACTGCACCTTCagcagaaaatgaaaattctgaGAATCCACAATCATCTTCCTCAGCTGCAACAAGTGTTATTCGAATGGCTTCAGTACAGAAAAGTCCAAAcccaaaagaaattataccACACAGGCTAATTAAAGTCGAAAAGACGACACAGTCAGGCTTTAGTCGAGACGTAGGCAAACgcccttttaaaaaaataccgAAGAAGCTTgtagtaaaattcaaaaatccaCCGCAAGTAGGGAatgttgaaattcaaaataggaAAGCTTCTAGTCCACAGCCAGGATCTTCGCAATCTCATGAAAATTATTCGTTGAGCACAGGTAATATGATAGAGACCGAGAAGAAAAGCGATGTTGAGGATAAAGTGCGTAAAATAACAGAGAATGCGAAGAAGGAGCTACCTGATGAAGCGAGTACAATCCTTGCAGAATTTGAAGTTGAAATGCCTATCGAAAGCGAAAATCAAGAAGTGGCAAGTAGTAATGAAAGAAGTAGCAAAGAAGCCAATTCAGTTACTCATGCAATAGATTCAAAAACATTACTAAAACTTGCTGAGAGGGCAGATGAAGTGGCTCTAGATGCCTCAAATATGCCCTTAGTAATTGTTCATGAACCCACAACACTGGACGAACCTCCGGTGCCAAATGTATTCGAATCGAGACCGTTTCAAAAACTGTCCGATACAGCAAgcacaaatgaaaataatttcacgaGGAAATTGGACGAATGCGTGGACAACAACCATGAGGAGACTTATTCAGTTCATCTAGCTACCGTCGAATCAGTTGAAGGCTGTCCTGTAAATAATGCTGATCAGGCGTCAGGACGAATTGTGCCAGTTACATTGAATTCATTTCCTTCGACATCTTTTTCGAAACCTTCAGCTAGTTCCTTTGCTGCTTTACGTGAACAGACTGATTTCCAAAATTCCCATAGCTATAATGATTACCCGTTTAGCTTTTTGTACACGAATAATATGGATAAAGGCTGCTTATCTCCCATCTATCCCGCCGATGATCAATCGTGGCAAAGGTATGGCGGAGCAACATTTCAGCAGACTGCACCGATGCAACTTCCGGATATAGATTCGGAAAGAAGCAGCTACATAGATCTAGACGCATGCAAGAAAAACACTAGTACTGACACAGTTCCTTCTGTCGATGCTTTGAACATTCGTACCGATGAAAAGATGCCTGCTAAGGGTGAAATATCAGAGCAGGAAAGCAATGGGGAGATTGATCTTTCATGGAGTCAAGCCTTATACAACGAGACCCAACGGCAAAACAATCAAACAGAAAACTACGGAACGAGGGAGAGCGGCAGTTTTAGTAACCAAGAATTCTTTTTCAGCCCGCAAAACTTAACCACCGATACAAAGCCGTCGATTAAatCAACCGAGACAACAGTGGAGGAAAAGCCAGAGCCACTTTTAACTAAAGGGAAGGAGAAAAAATGCTCTACCGTAAAAAAGCGGAAAACATTTCAGTGTGACCACTGCTTATCAGTATTTTCTAAGTTAAAAGATCGCAATTCTCATTTGCTCGAAAGTCACAGCTACAAGAGAGTTAATCGTCGCTTAATACGTGAACTACCTCCGGCTACTGTAACAACTGGCCAAACAGAAGCACAAAATCAAGCTGAGACTGATGATGCTATTGACATTAAAAAGCCTGAACTGACTGCAATTGCATCGATCGAATCTTCCCATCTTCCTAGAACTAAATATGATGCTATTCGCGCTGGAGTGTATCGAATgctaatgaattttaatttaagcgtTTTACAGCAGAATCAGAATGTGGATGTGGACAAAGCGTTGTTGGATACTAAATCCTTCTGCTGTTACACATGCAAACGAGATTTTATTAGTGTTAAGTCGTTTGATGAGCATTTGGCAGAGCATCCGGCGGAATGTTTCACTTGCAGTAAGAAATTTACTCGATGGATGTACTTTTCAATCCACTTAAAGAGACACTTGGGTTGGAAAGATTTCGCTTGTACAGTATGCAGCAAAAAGTTCGTTATTCGTAGCGCTCTGATAGAACATATGCGCATGCACACTGGAGTTACACCTTTAAAGTGCAAGTTTTGCGACAAACACTTCAAAAGGTATTCAAATTTAACGCAGCACAAAAGGGTATGCCATCAAACGAAAAGTTCGAAGAAAAAGGATTACGTGTGCCACTGCGGAGAGGTTTTACCTTCGAAAGCTCGTTTCCTTTGGCATAAGGAGACGCATGATACAAAACCAAAATGTTGTCCCTACTGCAGAGACAGATTTATACATTCTAACAGTCTCCGGCGGCACATTCGACTAGCGCATTCGGACAAATTCTCATATACGGAGCCAGCAGAATGTCCTGTATGTAATCAGGTGTACGCAAAAACTAGTCTTAAGGCGCACATGAGCACGCACTCGATGGACACCCAGCATGAGTGCGTGATCTGCAACAAGTCATTTAGTACCaaatggaatttgaaaatccACAGCTGGGTGCACGCTAGCAGAACAGCAAAGCCGTTCAAATGTGATTTATGCGTAAAGGCCTTTGTAAGGGAGATCGATTACAAGAACCACATGAATGCTCACAAGCAAATCAAGCCGTACACTTGTGAGTATTGCGGTTGCAAATTCATAAGGAAGTACAATTATATGCGCCACAGTCGAGAGCACCATGGTCAGAAAAAGTTTGGCTGCGATCTCTGCGGCAAGTTATTCCACAGACACTATTATTTGATAGAGCACAGACGGACCCACACCGGAGAGCGACCCTTCCTCTGCACGATTTGCGGTAAGAGTTCAACGACAAAAACTAACCACAACAAGCACCTTAAGATTCACCACTCGCGAGACCCTTTTACGACGGAAGCATAA
- Protein Sequence
- MGEHIPCPVCTLFLHPGMELADHLETHPKEQVIKALCSLASGRQPSKPPAPAQLSQRSHLPSVQGPPDGGLLTSSERPRLLAPSQHNVMIVNSQSTMVYQSSESAHHRMIPQVIQLPPPPLRLFSAARPNAVKFLPPPPAYGTAISQIRSQNTQNICSQFNQLSTNENPNYYTMNQNSFEHSFNSNSNSSTSPRLSMAPRNSSPRPSSSPSVLRFAESPVTAHYVERENGDFIVQETPRHIVECVEKDDGEFSVIEKVIKSPPSLVHFQENDNDVDFGSTENVDSISNEVTPEVESDVSNEGKEEAFSNVKVISNVKLAPKESLGLMENIMAATPGVELLWTGLVESVSDGIKKEDKIVDESSESSEPKCVATTAPSAENENSENPQSSSSAATSVIRMASVQKSPNPKEIIPHRLIKVEKTTQSGFSRDVGKRPFKKIPKKLVVKFKNPPQVGNVEIQNRKASSPQPGSSQSHENYSLSTGNMIETEKKSDVEDKVRKITENAKKELPDEASTILAEFEVEMPIESENQEVASSNERSSKEANSVTHAIDSKTLLKLAERADEVALDASNMPLVIVHEPTTLDEPPVPNVFESRPFQKLSDTASTNENNFTRKLDECVDNNHEETYSVHLATVESVEGCPVNNADQASGRIVPVTLNSFPSTSFSKPSASSFAALREQTDFQNSHSYNDYPFSFLYTNNMDKGCLSPIYPADDQSWQRYGGATFQQTAPMQLPDIDSERSSYIDLDACKKNTSTDTVPSVDALNIRTDEKMPAKGEISEQESNGEIDLSWSQALYNETQRQNNQTENYGTRESGSFSNQEFFFSPQNLTTDTKPSIKSTETTVEEKPEPLLTKGKEKKCSTVKKRKTFQCDHCLSVFSKLKDRNSHLLESHSYKRVNRRLIRELPPATVTTGQTEAQNQAETDDAIDIKKPELTAIASIESSHLPRTKYDAIRAGVYRMLMNFNLSVLQQNQNVDVDKALLDTKSFCCYTCKRDFISVKSFDEHLAEHPAECFTCSKKFTRWMYFSIHLKRHLGWKDFACTVCSKKFVIRSALIEHMRMHTGVTPLKCKFCDKHFKRYSNLTQHKRVCHQTKSSKKKDYVCHCGEVLPSKARFLWHKETHDTKPKCCPYCRDRFIHSNSLRRHIRLAHSDKFSYTEPAECPVCNQVYAKTSLKAHMSTHSMDTQHECVICNKSFSTKWNLKIHSWVHASRTAKPFKCDLCVKAFVREIDYKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHSREHHGQKKFGCDLCGKLFHRHYYLIEHRRTHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTTEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628636;
- 90% Identity
- iTF_00937554;
- 80% Identity
- -