Mrus037666.2
Basic Information
- Insect
- Machimus rusticus
- Gene Symbol
- MBD2
- Assembly
- GCA_951509405.1
- Location
- OX608054.1:15836352-15838134[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-22 2.2e-18 66.8 0.0 2 73 6 72 5 75 0.90 2 2 0.0005 3.1 8.7 0.0 29 74 122 175 94 178 0.85
Sequence Information
- Coding Sequence
- ATGAACTTGAACATCGAGCGCAGGAAAACCGAGTGCAACGCCCTGCCAAAGGGCTGGCAACGGGAGGAGGTCCTACGGAAGACGGGGCTCTCTGCTGGGAAGGTTGATGTCTATTATTACAGTCCCACCGGGAAAAAAATCGAGAATAAGCCACAGCTAGCTCGGCAGCTGGGCGACGTCCTCGATGTATCAACATTTGATTTTCGTACTGGCAAATTATTACCACACGCCCAGCAAATTTCAGTACAACGAACAGCGAGCTCCCTCAAACGAAAATTGCCCGCTGGAACGACGGCTATTTGTAATCCTACCAGTAGTAGTATGTCGTCAGCATTTCGCCATCATCTAGAACTCAGTCGAGGGATGCGGAACGATATATCGCTTGTGCCCCCGATTCGGCAAACTGCCTCCATATTTAAGCAGCCAGTTACTGCGGTAAAAAATCAGGAAGGGAAGGTCAAACATGACCTGAAAAATGTGTCTCAGGAAAAGCCCAAACAGCTCTTTTGGGAGAAGCGTCTAGAAGGGCTCAGAGCTTGTGATGTCAGTGGAGCGGAGTACGAGTCCATAGATCTACCAAAAGGTATAAAGCCCGTAGGCCCAAATGTTGCAGAGCACACCGTACTCCAGTCGGTTGCGACAGCTTTGCATGTCTCGAACCAGCCTGTGACTGGGCAAACTGCTTCTAAAAATGCCCTCACTAGCAACTCCGGGGTGTTTCTTAACCCCGAGCAGCCCTTAATGCACGTGATAGGCATCACAGATGAAGATATCCGCAAGCAGGAGGAACGGGTTACCTTAGCTCGACGGAGACTTCAAGAGGCTttaaaaggttaa
- Protein Sequence
- MNLNIERRKTECNALPKGWQREEVLRKTGLSAGKVDVYYYSPTGKKIENKPQLARQLGDVLDVSTFDFRTGKLLPHAQQISVQRTASSLKRKLPAGTTAICNPTSSSMSSAFRHHLELSRGMRNDISLVPPIRQTASIFKQPVTAVKNQEGKVKHDLKNVSQEKPKQLFWEKRLEGLRACDVSGAEYESIDLPKGIKPVGPNVAEHTVLQSVATALHVSNQPVTGQTASKNALTSNSGVFLNPEQPLMHVIGITDEDIRKQEERVTLARRRLQEALKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00717805;
- 90% Identity
- iTF_01049671;
- 80% Identity
- -