Matr013712.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000065.1:477246-480653[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.066 2.4e+03 -1.5 0.3 37 75 49 87 29 99 0.61 2 3 7.5e-112 2.7e-107 359.5 33.1 1 299 112 396 112 397 0.91 3 3 0.0028 1e+02 3.0 4.0 208 247 414 452 399 470 0.75
Sequence Information
- Coding Sequence
- ATGGCACAAGAAAACGCAAATGTTATAGTTCAAAATCTGGAAACAGATTTTACTAAAAGTGTTGCCGCATCCTTGAATAAAATTGATGATGATGAGGAATTTGACTTCAGTGATAGCGATTTTAAAGATTGTGAAAGCGATAACGCGGTGGAAGATAAAACTGGATCTGATAATTTAGAAATAACAAATACAACAAATGAGAGTGATGAGCCTTATGTTAAATATAATGGAAATATATCAAGAAATCAAAGTGTAGACAGTGACGGAGATTGCCTCTATAAGGAAAATGAAGATGAATTCATTGTTGATTTTCTTGGAAAAGGAAATGACATTGCGGAAGCTAGATTGGCTGCACGACGCCAGGCACGCGCAGAAGCGCGTGAAATTCGAATGCGTGAGTTAGAACGCCAGCAAAAAGAGCAGGAACAAAATGCTGATCGTGTATTTGACATGCAGACTGTGGCTGGTCTCGATCCTTTGTCTAGATCCCGGCTAAATATGTCAGGAAATTCTGGAAGAGGTACTTCAATGTCCTCAAGACGCAGCAGCGAGGATTCCCTCGAAGAAGAAAGTAGAAGTTTACGTGATATTAGGCATGAGCTTAAGGATGTTGAAGAACGATTTAGAAAAGCAATGATAGCAAATGCACAATTAGACAATGAAAGAGCCTCACAGTCATACCAAATCCAATTGTTAAAAGATAAATTGGAGGAAATGGAAGAGTCATTTGCGCAACTCCAGAGAGAATATAAGGAGAAATGTCGTGATCATAACGCTTTAAAAAGAAATTATGATAAATTAGATGAAGAATTAAAACTAGTTCGTGGGCAATTAGACGAAAGAGATACTCTTATAACTGAGCAGGGTTTAGTTATAGTTCTGGTAGAAAATCAAGATGGCTCAGATGCCAGGCGCGCTCTAGTCAGTATGGAGAACGCACAACTATTAGGTTCTGTTCAAGGCTCATTAGACGTGCGGCTTAAAAAATTCACTGAAGAAAAGCAACAACTCCAAAAAGAAGTCCAAAGCCTTCATCAGCAATTAAGTGACATTAAATCCCAAGGTCGACGGGGTGGATCTCTAAACGGGCCTTTAGGAGCAGAAGATGACTACGAAGCTCAAAGAGAGGCTAATAAACTTATAGCTGACTATAAATATAAGCTTCAAAAGGCAGAACAAGAAATAGCTAGTTTGCAAGCTAGTTTAGCAAGGTCTGAGACACAAGTTATAAGATATAAAAGTACCGCAGAAGCAGCAGAAAAAGCAGAAGGCGAACTTAAAATAGAACGAAGAAAACTTCAAAGAGAGaaccgtgagttaatggaacgtttggaagaactcgagacttccaataatcacctactgaaacgcttagataaactaaagaatgcgaagagcgcactgctcaaagaCCTCTGA
- Protein Sequence
- MAQENANVIVQNLETDFTKSVAASLNKIDDDEEFDFSDSDFKDCESDNAVEDKTGSDNLEITNTTNESDEPYVKYNGNISRNQSVDSDGDCLYKENEDEFIVDFLGKGNDIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTVAGLDPLSRSRLNMSGNSGRGTSMSSRRSSEDSLEEESRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREYKEKCRDHNALKRNYDKLDEELKLVRGQLDERDTLITEQGLVIVLVENQDGSDARRALVSMENAQLLGSVQGSLDVRLKKFTEEKQQLQKEVQSLHQQLSDIKSQGRRGGSLNGPLGAEDDYEAQREANKLIADYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEGELKIERRKLQRENRELMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628366;
- 90% Identity
- iTF_00628366;
- 80% Identity
- -