Matr025228.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- -
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000166.1:708465-710405[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-07 0.00021 21.9 0.0 1 36 15 50 15 56 0.95
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTATAAGCGGACGACTGATCGTCAATCCTGGAGTGAGGAATCAATGCGTAAAGCTATGGAAGCAGTTCGCAGTAACAAAATGGGCTGGCTTTTAGCGTCGAAGACATTTGGAGTACCACAAGCAACACTAAGAAGACATGCTTTGGATAGTAACAAAACTTTGGAGTCCTCTGCAAAGGGTCTAGGATGTTGGAAAGCTACttttccacctgatgtggaaagaaaattagttgagcatttgcaattacttgaatctcgtttgtttggactgacgcgaacgtctgttcaagaattagcttttgagttggctgaaaaaaacggttttgcacacaaatttaacccgcaaaaacaaaaagctggacaagaatggttagaagggtttttgagacgaaataaagatatttctttacgcaaaccagaagctacttcagctgctcgtgctcaggcttttaatcgacctcaagtcaataagtattttgagatttacggacatctgctggaatctgagaacattgggccacacagaatttataatgctgacgaatcaagcctgtctactgtacaaaaaccccagaagatattggctactactggtaggaagcaagttggcgtaataactagcgcagaacgtggaactaacaccactgttgtctgttgtgttaatgctattggtacctttgttccgccgatgatgatattttctaggaaaaatatgaaaaatgaattggtcgatgaagcacctcctggcactttaggtgtagctcaaccatcaggatggatgacaacggatttatttctgaaatggctcaaacactttcaaagttttgttaaatcatcgattgacgataaagttatattgattgtcgacgggcatgcaagccacaaagggcttgaaactttagaatatgccaaacaaaacggcattattattctgtgtctacctccacattgcactcatcgtctccagcctttggatgtctcattttttgcgcctttgaagacatatttcaaccaagagacatccaaatggcttaaacaacacccaggacgtgttgttacacagtttcaaattgctggcctgttcaaagaagcttatggtaaggcagctacagtgcgaaatggttgtaacggattcaaaagcactgggatttggcctctaaaccctgaaatatttcccgattatatgtacgaacctgcagagactacaaacataccactggaagacacctccaatatgcaatatcatcagcagataggtcctattccagttcccatagcaggaccctccacacaacagctagacgatttaatgtcacttcccggaacgaacgatctccaagcttctgaaactcagcaacaaataatccgcgccgtaacacctgacaataatgacacaacaggtcaaacaaccgactctactgaaccagcagacaattcaacagcaaaaactagtcaagaccttattttacctgctgcaaatcaaaatcgcccatctattggtaatgaaaaacatccctcatcctatacgttagcagtgcctattgaagttatatctcctgtcccaaaaggacattacgtaagtggccaaggcaaacgtaagccaaagaaacagcaaacctctttagttttgacttcaactccaaatatgaaagaaattaaggcaaaaaatgagcctaaagctccttcagagaagaagagacgaaaggttaccaaaaccatattccaagaagacagcgaagaagaaaatttgccaaactacgctcaagatgacgaagaggattgcgcatgcatttattgcaacgatctttattcgcgatcaaaacctggagaagactggttgcggtgtttaaaatgttcacattgggcccacgcttcttgcgcgaatgtttctaaacgaaccaagcggttcatttgcgagctttgcctttaa
- Protein Sequence
- MPRNYKRTTDRQSWSEESMRKAMEAVRSNKMGWLLASKTFGVPQATLRRHALDSNKTLESSAKGLGCWKATFPPDVERKLVEHLQLLESRLFGLTRTSVQELAFELAEKNGFAHKFNPQKQKAGQEWLEGFLRRNKDISLRKPEATSAARAQAFNRPQVNKYFEIYGHLLESENIGPHRIYNADESSLSTVQKPQKILATTGRKQVGVITSAERGTNTTVVCCVNAIGTFVPPMMIFSRKNMKNELVDEAPPGTLGVAQPSGWMTTDLFLKWLKHFQSFVKSSIDDKVILIVDGHASHKGLETLEYAKQNGIIILCLPPHCTHRLQPLDVSFFAPLKTYFNQETSKWLKQHPGRVVTQFQIAGLFKEAYGKAATVRNGCNGFKSTGIWPLNPEIFPDYMYEPAETTNIPLEDTSNMQYHQQIGPIPVPIAGPSTQQLDDLMSLPGTNDLQASETQQQIIRAVTPDNNDTTGQTTDSTEPADNSTAKTSQDLILPAANQNRPSIGNEKHPSSYTLAVPIEVISPVPKGHYVSGQGKRKPKKQQTSLVLTSTPNMKEIKAKNEPKAPSEKKRRKVTKTIFQEDSEEENLPNYAQDDEEDCACIYCNDLYSRSKPGEDWLRCLKCSHWAHASCANVSKRTKRFICELCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00408393;
- 90% Identity
- iTF_00428059;
- 80% Identity
- -