Basic Information

Insect: Macaria liturata
Gene Symbol: -
Assembly: GCA_964023185.1
Location: OZ026807.1:12441070-12443436[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.26 7e+03 -2.2 0.1 27 48 8 29 4 32 0.82

2 11 0.029 7.8e+02 0.9 0.0 16 48 55 88 45 94 0.81

3 11 0.0012 32 5.3 0.1 26 48 97 119 90 122 0.90

4 11 1.3e-06 0.036 14.7 0.0 24 53 155 184 148 185 0.88

5 11 0.021 5.8e+02 1.3 0.1 27 48 187 208 183 210 0.88

6 11 0.0064 1.7e+02 3.0 0.0 27 49 405 427 394 431 0.90

7 11 3.1e-05 0.82 10.4 0.2 26 49 462 485 458 488 0.91

8 11 0.0076 2e+02 2.7 0.2 26 48 491 513 486 517 0.86

9 11 0.066 1.8e+03 -0.3 1.1 7 47 512 542 507 547 0.57

10 11 0.16 4.4e+03 -1.5 0.0 27 50 552 575 548 578 0.83

11 11 0.016 4.2e+02 1.7 0.1 26 46 617 637 610 641 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.26	7e+03	-2.2	0.1	27	48	8	29	4	32	0.82
2	11	0.029	7.8e+02	0.9	0.0	16	48	55	88	45	94	0.81
3	11	0.0012	32	5.3	0.1	26	48	97	119	90	122	0.90
4	11	1.3e-06	0.036	14.7	0.0	24	53	155	184	148	185	0.88
5	11	0.021	5.8e+02	1.3	0.1	27	48	187	208	183	210	0.88
6	11	0.0064	1.7e+02	3.0	0.0	27	49	405	427	394	431	0.90
7	11	3.1e-05	0.82	10.4	0.2	26	49	462	485	458	488	0.91
8	11	0.0076	2e+02	2.7	0.2	26	48	491	513	486	517	0.86
9	11	0.066	1.8e+03	-0.3	1.1	7	47	512	542	507	547	0.57
10	11	0.16	4.4e+03	-1.5	0.0	27	50	552	575	548	578	0.83
11	11	0.016	4.2e+02	1.7	0.1	26	46	617	637	610	641	0.84

Sequence Information

Coding Sequence: ATGTCAACCACGGACTTTGTTTGTGACTACTGCAGTCGAACCTTTACAAGGAAATACAACTTACAAACCCACATAGAAAACTGTCACGAAACAGCTGCCAGTTACTGTGAAATTTGTGATCAAATGTTTGGGAGCCCGAGTGGCTTACAACAGCACTTGTTAAGAGGACACAATCAATACGGACAACCATATCCGGAGTGTGACATATGTGGCAGAATATTCACCAGAAAACAGAACATAATGTCACATATGATCACTGTACATTTACAAGGAATCGGGCCTGAGATTAGGTGTGACGTTTGTGGCAAGACTTTCACAACAGAACGTAATTTAAAGAGACATAACAAGTTGCTACACGATCCAAACATACAGTACCCAACTTGTGATGACTGCAAGAAGCCGTTCAAAAGCAAGCACACACTAGTCTTACATATACAAGCGATGCATAATCATACGGACAAGACTATCAAATGCCAAATGTGCGATAAGATTTACACGAATGGAAGAAATCTGAAGCGGCATATGGAGATGCAACACGGTGATAAAGAGGGATATAAATGTCATGTCTGTCCTAAAGTTTATACGTCCAATCAGAGCTTGAAAAGGCATATCAAAACATCGCACGGGAATTATAGTTATGAAGATGATTCGATAGCATGTGAAGTGAAGTTGGAAGATTCGGAGAATCAGGAATGGAATAGTGATTGCGATATAAATGATTCGATGGTGACGATGGCATTCAATTGTGGAAGTTGTTCGCAAAGTTTTGCAAACGAAGCTTTGCTGCGCCAACATATAAAGCAAGATCACTCCTTTGACGTGTTTTACGAATACTGCAAGAATCAGTTAGAGAAAATGGCCCATGTGGAAATTGGGGACCGGAGTCAGGTTTTCAAATGCGAATTCTGTTTGACGGCGTTTTTCAACGTCTACGAGTTAAAAGAGCATATGCGCGTAAACCACGATACAGATTACAACTTGTGCAGTTGCAACGTTTGTTTCCTCAAGTTTTTCAGTAAGGAAACGTTGCGGGAGCATAAAAGAATATGTCTGCCGCCTGCCAACGTCAACTCTTGCAACTTCTGCGATAAACTATTCACAGAGATTTTGAGTTTAGAGTTTCATACACGCATCTTCCATCCTCAAGCGCAATTGGCAGATCCTAATATAACTTCGACTAAATCTGACGAAGTCGAGTTAAGCTCTTTTAAATGCGACCATTGTGACCGAGTTTACTACAGCGACAGATCCCTCAAACATCACGTAAAGCTGAAACACACGACCGACGAAATCGTAGAATGTGGGTATTGCAACAAAATCTGcaacaacaaatattatttggcCTCCCACATAAAGATAGTTCACAGCGCTGTCGACTTCTCGAAATGTGATTATTGCGAAAAGATGTTCAAATCCAAACGCAATATTCGAAGGCATATCGAATATACGCATATGGGTATGCAAAGATATAAATGTATTGAGTGTGAAACTCTTTTCAAAGAGAAACGTAGCTTGCGAAAGCATGTTCGAACTAAGCATCCGAATTCGACAACGTTTCCCCAATGCCATATCTGCCACAAGAGATTCGAATCGGCAAAGTCCTGCAAAATACATCTAAAGCTACTCCATTCTTTCAATATGAATACATATCCGTGCGATCTTTGTTCCGTTTCCTTCAGTTCAAAAGAAGCGCTAAAAATACATCTGGGGACTAAGCATTTAGCTGAGGACGAAATTTACAAATGCGAAGAGTGTAACTTAGTTTTCAAAGGCTTGCAAAAATTTGATGAGCACAACGAACAAACTCATGCATATATAAATACAGTGACAAAACAGAAATCTTTACCCCGCTGTGTTATTTGTATGAAAGACTTTAGTACACGCAAAACTTTGCGACGCCACATCAAGAAGTTCCACAACGAATTTCACGCGGAAGATTTAGCGAACTATGGTTGTCGCAAACAAGATTTCAACATAAATTGCGAGGATTGTCTCAAACATATTAACGATAGTTATTGCGTGTCGATTTACAACCGCCTCAAACACGACAAGGAGGCCGTTATATTCAAATGTGAGACGTGTAAGACCTCCTTTAAGTCCATAGAGTTTGCAATCCAAAGACATAAGATCTCTAACGAGGAGAAACCTCAGCTCATGTTAAGCGACCTCTGTACTACACAAATGAGTGACGACGAAGGAGGTTCTACTCTCGGATCTCAATATATGGAGGCTGAAAGTACGACTGCAGATGTTCAAGTAAAGATTGAATTGGAAGATCTTGGAGAAACAGAAAGAAAGATCGAACCAATGTCTTCTATTAATTGGGATGAATATGAGCTAAAAACTGAAAATGATGAATTtgaatag
Protein Sequence: MSTTDFVCDYCSRTFTRKYNLQTHIENCHETAASYCEICDQMFGSPSGLQQHLLRGHNQYGQPYPECDICGRIFTRKQNIMSHMITVHLQGIGPEIRCDVCGKTFTTERNLKRHNKLLHDPNIQYPTCDDCKKPFKSKHTLVLHIQAMHNHTDKTIKCQMCDKIYTNGRNLKRHMEMQHGDKEGYKCHVCPKVYTSNQSLKRHIKTSHGNYSYEDDSIACEVKLEDSENQEWNSDCDINDSMVTMAFNCGSCSQSFANEALLRQHIKQDHSFDVFYEYCKNQLEKMAHVEIGDRSQVFKCEFCLTAFFNVYELKEHMRVNHDTDYNLCSCNVCFLKFFSKETLREHKRICLPPANVNSCNFCDKLFTEILSLEFHTRIFHPQAQLADPNITSTKSDEVELSSFKCDHCDRVYYSDRSLKHHVKLKHTTDEIVECGYCNKICNNKYYLASHIKIVHSAVDFSKCDYCEKMFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTTFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSKEALKIHLGTKHLAEDEIYKCEECNLVFKGLQKFDEHNEQTHAYINTVTKQKSLPRCVICMKDFSTRKTLRRHIKKFHNEFHAEDLANYGCRKQDFNINCEDCLKHINDSYCVSIYNRLKHDKEAVIFKCETCKTSFKSIEFAIQRHKISNEEKPQLMLSDLCTTQMSDDEGGSTLGSQYMEAESTTADVQVKIELEDLGETERKIEPMSSINWDEYELKTENDEFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00935923;
90% Identity: iTF_00935923;
80% Identity: iTF_00935923;