Mlit003574.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026807.1:12441070-12443436[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.2e-06 0.00033 21.5 4.2 1 23 6 29 6 29 0.95 2 20 8.6e-05 0.0067 17.4 0.1 2 23 35 57 34 57 0.95 3 20 1e-05 0.00081 20.3 0.2 2 23 66 88 66 88 0.97 4 20 2.3e-06 0.00018 22.4 1.1 2 23 97 119 96 119 0.93 5 20 0.0001 0.0078 17.2 1.5 2 23 127 149 127 149 0.94 6 20 1.8e-05 0.0014 19.5 0.8 2 23 157 179 156 179 0.96 7 20 3.5e-07 2.7e-05 24.9 3.1 1 23 185 208 185 208 0.98 8 20 0.00096 0.074 14.1 0.3 1 23 247 270 247 270 0.95 9 20 0.00053 0.041 14.9 0.9 1 23 298 321 298 321 0.98 10 20 0.078 6 8.1 2.7 2 21 329 348 328 349 0.93 11 20 2.5 1.9e+02 3.3 0.7 2 23 358 380 358 380 0.84 12 20 0.0033 0.25 12.4 5.5 1 23 403 426 403 426 0.96 13 20 0.00013 0.01 16.8 0.7 2 23 433 455 432 455 0.96 14 20 4.5e-05 0.0035 18.3 2.0 2 23 462 484 461 484 0.94 15 20 0.0075 0.58 11.3 2.2 1 23 490 513 490 513 0.97 16 20 0.19 15 6.9 7.1 2 23 521 543 521 543 0.95 17 20 0.00011 0.0088 17.0 0.2 1 23 550 573 550 573 0.96 18 20 0.1 8 7.7 0.7 1 19 580 598 580 603 0.82 19 20 0.0014 0.11 13.6 2.8 2 23 617 639 617 639 0.96 20 20 0.56 43 5.4 1.4 1 12 689 700 689 702 0.92
Sequence Information
- Coding Sequence
- ATGTCAACCACGGACTTTGTTTGTGACTACTGCAGTCGAACCTTTACAAGGAAATACAACTTACAAACCCACATAGAAAACTGTCACGAAACAGCTGCCAGTTACTGTGAAATTTGTGATCAAATGTTTGGGAGCCCGAGTGGCTTACAACAGCACTTGTTAAGAGGACACAATCAATACGGACAACCATATCCGGAGTGTGACATATGTGGCAGAATATTCACCAGAAAACAGAACATAATGTCACATATGATCACTGTACATTTACAAGGAATCGGGCCTGAGATTAGGTGTGACGTTTGTGGCAAGACTTTCACAACAGAACGTAATTTAAAGAGACATAACAAGTTGCTACACGATCCAAACATACAGTACCCAACTTGTGATGACTGCAAGAAGCCGTTCAAAAGCAAGCACACACTAGTCTTACATATACAAGCGATGCATAATCATACGGACAAGACTATCAAATGCCAAATGTGCGATAAGATTTACACGAATGGAAGAAATCTGAAGCGGCATATGGAGATGCAACACGGTGATAAAGAGGGATATAAATGTCATGTCTGTCCTAAAGTTTATACGTCCAATCAGAGCTTGAAAAGGCATATCAAAACATCGCACGGGAATTATAGTTATGAAGATGATTCGATAGCATGTGAAGTGAAGTTGGAAGATTCGGAGAATCAGGAATGGAATAGTGATTGCGATATAAATGATTCGATGGTGACGATGGCATTCAATTGTGGAAGTTGTTCGCAAAGTTTTGCAAACGAAGCTTTGCTGCGCCAACATATAAAGCAAGATCACTCCTTTGACGTGTTTTACGAATACTGCAAGAATCAGTTAGAGAAAATGGCCCATGTGGAAATTGGGGACCGGAGTCAGGTTTTCAAATGCGAATTCTGTTTGACGGCGTTTTTCAACGTCTACGAGTTAAAAGAGCATATGCGCGTAAACCACGATACAGATTACAACTTGTGCAGTTGCAACGTTTGTTTCCTCAAGTTTTTCAGTAAGGAAACGTTGCGGGAGCATAAAAGAATATGTCTGCCGCCTGCCAACGTCAACTCTTGCAACTTCTGCGATAAACTATTCACAGAGATTTTGAGTTTAGAGTTTCATACACGCATCTTCCATCCTCAAGCGCAATTGGCAGATCCTAATATAACTTCGACTAAATCTGACGAAGTCGAGTTAAGCTCTTTTAAATGCGACCATTGTGACCGAGTTTACTACAGCGACAGATCCCTCAAACATCACGTAAAGCTGAAACACACGACCGACGAAATCGTAGAATGTGGGTATTGCAACAAAATCTGcaacaacaaatattatttggcCTCCCACATAAAGATAGTTCACAGCGCTGTCGACTTCTCGAAATGTGATTATTGCGAAAAGATGTTCAAATCCAAACGCAATATTCGAAGGCATATCGAATATACGCATATGGGTATGCAAAGATATAAATGTATTGAGTGTGAAACTCTTTTCAAAGAGAAACGTAGCTTGCGAAAGCATGTTCGAACTAAGCATCCGAATTCGACAACGTTTCCCCAATGCCATATCTGCCACAAGAGATTCGAATCGGCAAAGTCCTGCAAAATACATCTAAAGCTACTCCATTCTTTCAATATGAATACATATCCGTGCGATCTTTGTTCCGTTTCCTTCAGTTCAAAAGAAGCGCTAAAAATACATCTGGGGACTAAGCATTTAGCTGAGGACGAAATTTACAAATGCGAAGAGTGTAACTTAGTTTTCAAAGGCTTGCAAAAATTTGATGAGCACAACGAACAAACTCATGCATATATAAATACAGTGACAAAACAGAAATCTTTACCCCGCTGTGTTATTTGTATGAAAGACTTTAGTACACGCAAAACTTTGCGACGCCACATCAAGAAGTTCCACAACGAATTTCACGCGGAAGATTTAGCGAACTATGGTTGTCGCAAACAAGATTTCAACATAAATTGCGAGGATTGTCTCAAACATATTAACGATAGTTATTGCGTGTCGATTTACAACCGCCTCAAACACGACAAGGAGGCCGTTATATTCAAATGTGAGACGTGTAAGACCTCCTTTAAGTCCATAGAGTTTGCAATCCAAAGACATAAGATCTCTAACGAGGAGAAACCTCAGCTCATGTTAAGCGACCTCTGTACTACACAAATGAGTGACGACGAAGGAGGTTCTACTCTCGGATCTCAATATATGGAGGCTGAAAGTACGACTGCAGATGTTCAAGTAAAGATTGAATTGGAAGATCTTGGAGAAACAGAAAGAAAGATCGAACCAATGTCTTCTATTAATTGGGATGAATATGAGCTAAAAACTGAAAATGATGAATTtgaatag
- Protein Sequence
- MSTTDFVCDYCSRTFTRKYNLQTHIENCHETAASYCEICDQMFGSPSGLQQHLLRGHNQYGQPYPECDICGRIFTRKQNIMSHMITVHLQGIGPEIRCDVCGKTFTTERNLKRHNKLLHDPNIQYPTCDDCKKPFKSKHTLVLHIQAMHNHTDKTIKCQMCDKIYTNGRNLKRHMEMQHGDKEGYKCHVCPKVYTSNQSLKRHIKTSHGNYSYEDDSIACEVKLEDSENQEWNSDCDINDSMVTMAFNCGSCSQSFANEALLRQHIKQDHSFDVFYEYCKNQLEKMAHVEIGDRSQVFKCEFCLTAFFNVYELKEHMRVNHDTDYNLCSCNVCFLKFFSKETLREHKRICLPPANVNSCNFCDKLFTEILSLEFHTRIFHPQAQLADPNITSTKSDEVELSSFKCDHCDRVYYSDRSLKHHVKLKHTTDEIVECGYCNKICNNKYYLASHIKIVHSAVDFSKCDYCEKMFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTTFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSKEALKIHLGTKHLAEDEIYKCEECNLVFKGLQKFDEHNEQTHAYINTVTKQKSLPRCVICMKDFSTRKTLRRHIKKFHNEFHAEDLANYGCRKQDFNINCEDCLKHINDSYCVSIYNRLKHDKEAVIFKCETCKTSFKSIEFAIQRHKISNEEKPQLMLSDLCTTQMSDDEGGSTLGSQYMEAESTTADVQVKIELEDLGETERKIEPMSSINWDEYELKTENDEFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00936235;
- 90% Identity
- iTF_00936235;
- 80% Identity
- iTF_00936235;