Mlit002572.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026806.1:19731254-19733194[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-07 8.8e-05 22.7 0.0 1 37 15 51 15 58 0.91
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTATAAGCGGACGACTGATCGTCAATCCTGGAGTGAGGAATCAATGCGTAAAGCTATGGAAGCAGTTCGCAGTAACAAAATGGGCTGGCTTTTAGCGTCGAAGACATTTGGAGTACCACAAGCAACACTAAGAAGACATGCTTTGGGTAGTAACAAAACTTTGGAGTCCTCTGCAAAGGGTCTAGGATGTTGGAAAGCTACTTTTCCACCTGATTTGGAAAGAAAATTAGCTGAGCATTTGAAATTACTTGAATCTCGTTTGTTTGGACTGACGCGAACGTGTGTTCAAGAATTAGCTTTTGAGTTGGCTGAAAAAAACGGTTTTGCACACAAATTTAACCCGCAAAAACAAAAAGCTGGACAAGAATGGTTAGAAGGGTTTTTGAGacgaaataaagatatttctttacgCAAACCAGAAGCTACTTCAGCTGCTCGTGCTCAGGCTTTTAATCGACCTCAAGTCAATAAGTTTTTTGAGATTTACGGACATCTGCTGGAATCTGAGAACATTGGGCCACACAGAATTTATAATGCTGACGAATCAAGCCTGTCTACTGTACAAAAACCCCAGAAGATATTGGCTACTACTGGTAGGAAGCAAGTTGGCGTAATAACTAGCGCAGAACGTGGAACTAACACCACTGTTGTCTGTTGTGTTAATGCAATTGGTACCTTTGTTCCGCCGATGATGATATTTTCTaggaaaaatatgaaaaatgaaTTGGTCGATGAAGCACCTCCTGGCACTTTAGGTGTAGCTCAACCATCAGGATGGATGACAACGGATTTATTTCTGAAATGGCTCAAACACTTTCAAAGTTTTGTTAAATCATCGATTGAcgataaagttatattgattgTCGACGGGCATGTAAGCCACAAAGGGCTTGAAACTTTAGAATATGCCAAACAAAACGGCATTATTATTCTGTGTCTACCTCCACATTGCACTCATCGTCTCCAGCCTTTGGATGTCTCATTTTTTGCGCCTTTGAAGACATATTTCAACCAAGAGACATCCAAATGGCTTAAACAACACCCAGGACGTGTTGTTACACAGTTCCAAATTGCTGGCCTGTTCAAAGAAGCTTATGGTAAGGCAGCTACAGTGCAAAATGGTTGTAACGGATTCAAAAGCACTGGGATTTGGCCTCTAAACCCTGAAATATTTCCCGATTATATGTACGAACCTGCAGAGACTACAAATATACCACTGGAAGACACCTTCAATATGCAATATCATCAGCAAATAGGTCCTATTCCAGTGCCCATAGCAGGACCCTCCACACAACAGCTAGACGATTTAATGTCACTTCCCGGAACGAACGATCTCCAAGCTTCTGAAACTCAGCAACAAATAATCCGCGCTGTAACACCTGACAATAATGACACAACAGGTCAAACAACCGACTCTACTGAACCAGCAGACAATTCAACAGCAAACACTAGTCAAGACCTTATTTTACCTGCTGCAAATCAAAATAGCCCATCTATTGGTAATGAAAAACATCCCTCATCCTATACGTTAGCAGTGCCTATTGAAGTTATATCTCCTGTCCCAAAAGGACATTACGTAAGTGGCCAAGGCAAACGTAAGCCAAAGAAACAGCAAACCTCTTTAGTTTTGACTTCAACTCCAAATATGAAACAAATTAAGGCAAAAAATGAGCCTAAAGCTTCTTCAGAGAAGAAGAGACGAAAGGTTACCAAAACCATATTCCAAGAAGACAGCGAAGAAGAAAATTTGCCAAACTACGCTCAAGACGACGAAGAGGATTGCGCATGCATTTATTGCAACGATCTTTATTCGCGATCAAAACCTCGAGAAGACTGGTTGCGGTGTTTAAAATGTTCAAATTGGGCCCACGCTGCTTGCGCGGATGTTTCTAAACGAACCAAGCGGTTCATTTGTGAGCTTTGcctttaa
- Protein Sequence
- MPRNYKRTTDRQSWSEESMRKAMEAVRSNKMGWLLASKTFGVPQATLRRHALGSNKTLESSAKGLGCWKATFPPDLERKLAEHLKLLESRLFGLTRTCVQELAFELAEKNGFAHKFNPQKQKAGQEWLEGFLRRNKDISLRKPEATSAARAQAFNRPQVNKFFEIYGHLLESENIGPHRIYNADESSLSTVQKPQKILATTGRKQVGVITSAERGTNTTVVCCVNAIGTFVPPMMIFSRKNMKNELVDEAPPGTLGVAQPSGWMTTDLFLKWLKHFQSFVKSSIDDKVILIVDGHVSHKGLETLEYAKQNGIIILCLPPHCTHRLQPLDVSFFAPLKTYFNQETSKWLKQHPGRVVTQFQIAGLFKEAYGKAATVQNGCNGFKSTGIWPLNPEIFPDYMYEPAETTNIPLEDTFNMQYHQQIGPIPVPIAGPSTQQLDDLMSLPGTNDLQASETQQQIIRAVTPDNNDTTGQTTDSTEPADNSTANTSQDLILPAANQNSPSIGNEKHPSSYTLAVPIEVISPVPKGHYVSGQGKRKPKKQQTSLVLTSTPNMKQIKAKNEPKASSEKKRRKVTKTIFQEDSEEENLPNYAQDDEEDCACIYCNDLYSRSKPREDWLRCLKCSNWAHAACADVSKRTKRFICELCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00408393;
- 90% Identity
- iTF_00428059;
- 80% Identity
- -