Mlit009426.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026812.1:8086963-8087343[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-08 4.5e-06 26.8 0.0 2 37 23 58 22 65 0.85
Sequence Information
- Coding Sequence
- ATGCCTCCATCGAAaccaaatactaaaaaaatcggTGTCGTGAAAAGAAAATTGTTCCAGTACTCACCGCATAAAATAACATTAGCGTTGAACGCAATAAAGAATGGGATGCCCGTTGCCACTGCTAGTAGAGATTTTAACGTACCTCGAACGACTTTGCGTCACAAAATTTCTGAAAAAGCGCCTGCAACTTCTGGACATGTAGGGCCCCAGTCAGTTCTTGGAAGACAAATAGAAAACGAACTTGTCATATGGATCAAAGATTGCGCTCGCGCTGGATTTCCTATCAGCAAGGAAGGTTTACTGGATTCTGTTAAGAAAATTGTTGTGAAGGGCCATATTGCTAcaccttttataaataatagacCTTCAAGATCCTAG
- Protein Sequence
- MPPSKPNTKKIGVVKRKLFQYSPHKITLALNAIKNGMPVATASRDFNVPRTTLRHKISEKAPATSGHVGPQSVLGRQIENELVIWIKDCARAGFPISKEGLLDSVKKIVVKGHIATPFINNRPSRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985936; iTF_01076416; iTF_01443777; iTF_01401230; iTF_00276316;
- 90% Identity
- iTF_01401230;
- 80% Identity
- -