Basic Information

Insect: Lysandra coridon
Gene Symbol: -
Assembly: GCA_905220515.1
Location: HG992076.1:60650-63236[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.6e-06 0.00039 21.3 2.3 1 23 87 109 87 109 0.98

2 18 0.0087 0.73 11.0 3.5 1 23 116 138 116 138 0.97

3 18 0.00091 0.077 14.1 2.3 1 23 144 166 144 166 0.95

4 18 6.7e-05 0.0057 17.7 1.2 1 23 172 194 172 194 0.97

5 18 0.0037 0.31 12.2 1.5 1 23 200 222 200 222 0.96

6 18 0.0012 0.1 13.8 3.3 1 23 230 252 230 252 0.97

7 18 1e-05 0.00089 20.2 2.6 1 23 258 280 258 280 0.99

8 18 0.0042 0.36 12.0 0.2 1 23 290 312 290 312 0.86

9 18 0.027 2.3 9.5 0.4 1 23 320 342 320 342 0.97

10 18 0.00084 0.071 14.2 3.7 1 23 348 370 348 370 0.97

11 18 0.0029 0.24 12.5 1.0 1 23 376 398 376 398 0.97

12 18 0.28 24 6.3 0.2 1 11 406 416 406 420 0.90

13 18 0.00022 0.019 16.1 3.6 1 23 435 457 435 457 0.99

14 18 0.0009 0.076 14.1 7.4 1 23 463 485 463 485 0.98

15 18 5.3e-05 0.0045 18.0 5.7 1 23 491 513 491 513 0.98

16 18 3.3e-05 0.0028 18.7 2.4 1 23 519 541 519 541 0.98

17 18 5.9e-07 5e-05 24.1 0.3 1 23 549 571 549 571 0.97

18 18 5.9e-06 0.0005 21.0 3.9 1 23 577 599 577 599 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.6e-06	0.00039	21.3	2.3	1	23	87	109	87	109	0.98
2	18	0.0087	0.73	11.0	3.5	1	23	116	138	116	138	0.97
3	18	0.00091	0.077	14.1	2.3	1	23	144	166	144	166	0.95
4	18	6.7e-05	0.0057	17.7	1.2	1	23	172	194	172	194	0.97
5	18	0.0037	0.31	12.2	1.5	1	23	200	222	200	222	0.96
6	18	0.0012	0.1	13.8	3.3	1	23	230	252	230	252	0.97
7	18	1e-05	0.00089	20.2	2.6	1	23	258	280	258	280	0.99
8	18	0.0042	0.36	12.0	0.2	1	23	290	312	290	312	0.86
9	18	0.027	2.3	9.5	0.4	1	23	320	342	320	342	0.97
10	18	0.00084	0.071	14.2	3.7	1	23	348	370	348	370	0.97
11	18	0.0029	0.24	12.5	1.0	1	23	376	398	376	398	0.97
12	18	0.28	24	6.3	0.2	1	11	406	416	406	420	0.90
13	18	0.00022	0.019	16.1	3.6	1	23	435	457	435	457	0.99
14	18	0.0009	0.076	14.1	7.4	1	23	463	485	463	485	0.98
15	18	5.3e-05	0.0045	18.0	5.7	1	23	491	513	491	513	0.98
16	18	3.3e-05	0.0028	18.7	2.4	1	23	519	541	519	541	0.98
17	18	5.9e-07	5e-05	24.1	0.3	1	23	549	571	549	571	0.97
18	18	5.9e-06	0.0005	21.0	3.9	1	23	577	599	577	599	0.97

Sequence Information

Coding Sequence: ATGGAGGTGTTGTCTGTGGTTGAGGAGGCCGTGTCACTGGAGCAGCTCGTTGGGGATCTGTTCCCGGACACGGACGAGCCACTCCCCATACACGACTTCGCCGACTTGGAATTGAGTCTAACACAGAGCGCGTTCACGAAACCCACAGAGTTCCTCGCGGAGCACAATAGGACCGAAAAACAGAAACAGCCGAGCGCGAGCGAGAACAAAGATTTGCAATTTTTCTTCGGTACGATAGAGAGGGATAGCAACAAACCGTACTCGTGCGACGTGTGCGGATTGAGATTCTCGTACAGAAGCTACTTGAACAAACACAAGAACAGGCACGATGGACAAGAGAACACCTTCAGCTGCGATCGGTGCTTCCTTAAGTTTCCCACGCAGAAACTACTCAAACAACACAAAACGAAGCACACAGTCATCTTCCAACACTTCTGCAACGCGTGTGATGCGAAATTCACCTCCAAGAGTGGACTGAAAGCGCACAAGAAGTTGCACGCGGGCGAGAGACCATTTCCTTGTGACTCGTGCCCCAAGAAGTTCACTTCGCAAGTGTACTTGGACAAGCATAAGAGACTACACTTCTCGGACGAGTCTCACGCTTGCAGTCAATGCGGGAAACGATTCGCAGCCGATCTGTCCTTGAAGATACACAAAAGGAAGCACGCGACGACCAGCACCAGGAACCACTACTGCGAGATCTGCATGAAGAAATTCACGTCGGAGGCATATCTGAAGATCCACAAGAAAACACACGCCGGAAACAAACTGTTCAAATGTAAGGTGTGCAAGAAGATATTCAGCTCTGAGATATATCTGAAGATACACCGACGGAAACACGCCCTGCCTCAAACTGATGCTGCTCTATACACCTGCGACGTATGCGACAAGGAGTTCAAGTCTCAAAACATTCTAGACATACACGAGACGGTCCACACAACGCATATCGACAGATCCTTTAAATGCGACCTCTGCGGCGTCAAACTACCCACCAGGGATATACTGGAGCGACACAAGAGCAAACATAACGAGCAGAGCCTCCACAAGTGTACGGTCTGCCTCAAGATGTTCGCGTCGCGGAGATACCTGAACATACACTACAAGCAACACCCTGACGACCGACCCTTCTCCTGCGGCATCTGCTACATGAGGTTCTCCCTCAACAAATACTTGATCGCCCACAAAAAACTGCACAAGGGCGAGAAGATCAAACTCTACAACTGCAACATCTGCCACGAGAAGTTCACCGCGAAGATCCTGCCCGAACACAAAATAACGCACAAGCTGCTCGACGACAGGCCGTACAAATGCGATCGGTGCCCGCAGACCTTCACACTCACCACCCATCTGAAGCTACACCAGAAAGTTCACTCCGAGACCACGATATACAAGTGCGAGCACTGCCCGATGACCTTCGACAAGAGGTGGCACCTCCACAAACACGAGAAGTCGCACACCGACATCAAACCGTACGAGTGCGACATCTGCCACATGAAGTTCCGGCACAAGAGTCACGTGACCGTCCACGTCCGAATACACATGAACGCGAAACCCTTCCGCTGCAGGGTCTGCTATAGGCGGTTTCCCAATAACAGCGGGTTGAAGCGGCACAAGCTGACTCACAGTAAAGTCAAGGATAAACCCCACGAGTGTGACGTTTGCGGTCAAGCGTTCGTTCGGAATAGCGATCTGAAGCGACACGCGCGCGCGCATACCGGCGAGCGCCAGTACGCGTGCGACGTTTGCGACAAAAAGTTCTCGCAGAACTGCAACTTGACGCGACACAAAAAATTGCACGAGACTTCACGAGACTAA
Protein Sequence: MEVLSVVEEAVSLEQLVGDLFPDTDEPLPIHDFADLELSLTQSAFTKPTEFLAEHNRTEKQKQPSASENKDLQFFFGTIERDSNKPYSCDVCGLRFSYRSYLNKHKNRHDGQENTFSCDRCFLKFPTQKLLKQHKTKHTVIFQHFCNACDAKFTSKSGLKAHKKLHAGERPFPCDSCPKKFTSQVYLDKHKRLHFSDESHACSQCGKRFAADLSLKIHKRKHATTSTRNHYCEICMKKFTSEAYLKIHKKTHAGNKLFKCKVCKKIFSSEIYLKIHRRKHALPQTDAALYTCDVCDKEFKSQNILDIHETVHTTHIDRSFKCDLCGVKLPTRDILERHKSKHNEQSLHKCTVCLKMFASRRYLNIHYKQHPDDRPFSCGICYMRFSLNKYLIAHKKLHKGEKIKLYNCNICHEKFTAKILPEHKITHKLLDDRPYKCDRCPQTFTLTTHLKLHQKVHSETTIYKCEHCPMTFDKRWHLHKHEKSHTDIKPYECDICHMKFRHKSHVTVHVRIHMNAKPFRCRVCYRRFPNNSGLKRHKLTHSKVKDKPHECDVCGQAFVRNSDLKRHARAHTGERQYACDVCDKKFSQNCNLTRHKKLHETSRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289012;
90% Identity: iTF_01248395;
80% Identity: -