Basic Information

Gene Symbol
-
Assembly
GCA_905163515.1
Location
LR991086.1:10710771-10721909[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.0057 0.62 11.8 1.0 3 23 658 679 657 679 0.96
2 23 0.4 44 6.0 0.3 1 22 1058 1079 1058 1079 0.95
3 23 8.8 9.6e+02 1.8 0.4 1 22 1121 1142 1121 1144 0.82
4 23 0.00067 0.073 14.7 1.1 3 22 1155 1174 1153 1174 0.94
5 23 0.93 1e+02 4.8 0.0 3 23 1183 1204 1181 1204 0.85
6 23 0.021 2.3 10.0 0.2 3 23 1224 1245 1222 1245 0.96
7 23 0.0079 0.86 11.4 3.3 1 23 1251 1274 1251 1274 0.95
8 23 0.15 16 7.3 0.0 1 23 1300 1323 1300 1323 0.90
9 23 0.0065 0.71 11.6 3.5 1 23 1328 1350 1328 1350 0.97
10 23 0.16 17 7.3 0.8 1 23 1356 1379 1356 1379 0.95
11 23 0.015 1.7 10.4 1.0 1 23 1392 1414 1392 1414 0.97
12 23 0.00021 0.023 16.3 1.8 1 23 1468 1491 1468 1491 0.97
13 23 0.012 1.3 10.8 1.2 1 23 1551 1574 1551 1574 0.96
14 23 0.0028 0.3 12.8 2.1 2 23 1600 1622 1599 1622 0.95
15 23 0.047 5.1 8.9 0.1 2 23 1628 1650 1627 1650 0.94
16 23 0.0082 0.9 11.3 0.1 1 21 1694 1714 1694 1715 0.95
17 23 0.00049 0.054 15.1 1.0 1 23 1725 1747 1725 1747 0.93
18 23 0.00013 0.014 17.0 0.4 2 23 1837 1859 1836 1859 0.93
19 23 4.7e-07 5.1e-05 24.7 1.4 3 23 1866 1886 1865 1886 0.98
20 23 0.069 7.5 8.4 1.4 1 23 1905 1927 1905 1928 0.94
21 23 0.14 16 7.4 0.0 1 23 1951 1973 1951 1973 0.97
22 23 0.032 3.5 9.4 0.6 1 23 1979 2002 1979 2002 0.95
23 23 0.00023 0.025 16.2 0.9 1 23 2010 2033 2010 2033 0.97

Sequence Information

Coding Sequence
ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTGCTACCACCAGTTCCGATGACTCTGAACCTCCCGTCCTCGCTTCGAAAATCAAGGATTGCGTGTCTGTACAGATAAATGAAAATGATGACCTGCCCACAAATGTCTGCAAGAAATGTTTGGACAATGTCAATAATtggcatatatttaaaaatgtatgtgAAAGGACACAAAACAAACTACAGTCTCTGATTAGCAAAGATGGCAGCCAACTAGAAGAGgTGCAAATAAAGAGTGAGCCCCTGTCTGATGAAATTTATGATGATGGAGTGGTTATTGATGGCTCTTATCCTGACAGTGAGaatACCACTATAGCAAATAAAGTTCAACCTGAAGGCCCTCCAATATTGGCTTCATTGGGGCTTACACCCAGGAGTGATAAGAAATGTGTCGATCCTCGAATGGATTGGCATCGGGTTCATGCAATCTTGGACATGGTTCAAGAAGATGATGTGATTGACTCCCTACAATCTAAAGAAGAGTGTGATGTATTGCAGCAGTCTGATCATGATTCTGACACAGAGACTGAACTCCAACCAGACATTGAGGATGCATATGTTGATTGCAAAAATGGCtttatctgtaaaaataaaaaagtcttGTCAAAACATCCCCAAGTGTCCCCGTCTATGAATAATGTTAAGATTAAGGAAGTAATTCATCTCCGAAAAAGTAAAACAACCTTACCTAAACAAAATTGTCCGCGACCTAAAAATGCTTGGCAATTGTTATTCACTGATGACCTACTAGAATTGATAGTAACATCTaccaatgataatattttaaaaaatcatagaAATAGTTCAATTATAACCAACGTCAGCGAAATTAAAACGCTTATCGGCATTTTATATATGCATAGTATAATGCGGCCGACGCATCAGAAGTACAGTGACCTTTGGAATAGTAAATGTGGTGTACCTTGCGTTAGTAGTTCCATGGAACACGAAAGGTTTCAATACCTTCTTCAAAATATAAGCTTTGATAAGGAAGACGGTGACAGTATTATACAATACGATATTATGAAACGTATGCGCAAAGTATTTGAAATCTTTGCCATGAATTCTAGAACAGCTCACATTGTCGAGAATACTGTGGTTATTGATGAGATCATTGTGCCAGTTTACGGCCCTTGCCCATTTCGATATAATATTGACAAGAAACCACTAAAACGTGGCATAAAAATGGTATTGCTTGTTGATTCTTCAACATTCTATGTTAGTAATTTAGATGTAATTACTGATCGCTATTTTAGTGCCGATGAGATAACTAAAAAGTTAGTTCAGCACTTGGTTGGCACAGGTAGAACAATTGTCATGGATAGCTGGTATACATCTTTCTCTTTAATAGAACTACTCAAGAATAATTATCAGCTATTTTCTATAGCAGCTTTGAATCCTAATAGTGACTGGATTCCaccattattttattctaagtaCAGAAAAGCTAGAACATTCATGTCTGGATTTATCAATGAAGATGTTTTGCTCACATCATATGTTAATAGTGAACTAAAATCTATAAATGTCATAACAAACGAACCCCATTATTATAGAAAAGCCCATGTTAATCAAACAACAGTTGTTTCTGTTTACAAAAAGAACCAATCGGCTGTAGAAGTTATTGATGTTGTTATGAATTATTATACAACTATGCAACATACCAATGATTGGACTTTATCATTATTCTTTACATTGTTAAATATTGCAACAGTCAATGCTCAGggTGTGGAGAGTGAAAAAGATGAAGAagaggaggaggaggaggaggaaGAAGAAATGAATGAGCCCGTTCAACCATTGGCAAAAGTGCCTCATATGCCAGAGGTGTCCATAACGGTGATGCGACCAACAGGAGAAACTCTGCACGCCCGACAAGGCATTCACCAACTTGCTTCTAAAGACTGTCTTGTTTGCGGCCGTTCCTATAGATATTCCCACAATGCTCGTCGCCACGAGCTCACGGCTCATAGCTTTGATAGATATACAAACAAAATTACTCCAAAAAAACCCTATCCTTCTTTCCAACCCAAACTAAGGCCAAATCCATTTAACCCAAAAGCGCGGTTGATGCCGAACCCTATTAGCCATAAGATGCAATTCATGAACAAAAATATTCCGGCAAAAATTGTTTCAATGAACAAAGTTATTACACCTCAAAAACCGATACCAATAAAATCAGCAAAAACACCACAAAATAATTTGCCTTATCCTCTCCGTATAAAAGCTCTCAAAGACttacaaataaagaaaaaggaACCCCAAATTTTAAAGTCGCTGTTGACTTCAAAGCCTGAAGTTTTAGTTTCTGAACCAGAAATATTAAATTCTGCACCTGAAAGTCCAGAGACACTGATATCGGAACCAGAAATCGCATCTTTTCAAGTAGAAGCAATTCTTTCTGAGCCAGACATGGATGGTTACGATCAGGTTCAGGGCGATGAAGAAGTTGATGGAGAAATGCATAATAATCAAAGTCAAAATTACGATACAGTCGATATCAATTCGGAAAGCGAGATTGAGATCGCTCGCCAACAAAACAATTATAATGAGGGTGAGGAAGAACAAATCCTTGGTGATGAAAATATCGATCAGGATGATGACAACGTTGATGGTGGACAGAGCGATAATGATCACGAAGGTATAGACGAAGCAGAAAGTCAAGAACACATGGAGAATGAAGACGGCCTTGAAATAAAAACAGAGAATGAACTGAAAGACAGCGAGGAAGGACAAGATGAAAGAGAACATGAAGAAGAAATGAATCACGATGAGAATGAGGACGATGATGACGATCTGCCAATACCATTACAGCCAGTCGTTGAAATAAACGAAGAGGTTAATCCATTTAATAGCGTGATGCCtgacgaagaagaagaacctTTGGAGAACGCTGATCCGAATGAGACTATTGAAGAGGAAGAAGCCAAAGATATCGACCCTGATAAAGTTTATGTCACAAAAGCTCAACGCgatttcatattaaaatatcgTGACGTAATCGAGCAAATCAATACGAAACGTTGCTTATGTTGTGACAGAGAACATCCGCGTAGGAAAGCTGTTATACAACATTTACAGAAAAATGGTCATAAGGTACCAAAGCACACGTGTTACAATTGCGTAGTCACGTTTGGACATATCGGTGCACTACTCAGCCACATGAGATCAAACTCTTGCACTGATTTATGGAAAATTATATACAACGAAAATGGTATCACCGATGACATGGTTTTGGAAGATGAACCCAAGGAGGTGAAAGTCCAATACAAAGATATTTTCAATGCTAGATCCTACGCCTGTAAACTCTGTCCAGCTAAATTCCAActgaaacaatttattatgaaacATGTATTAGATACTCACGAAGATGGACAATCTAGGGTTCCACTTGCTTGTGTTCATTGCCGTGCAAGGTTCAAAGATAAGAGTTTGCTTAAGAAGCATATCCGTAAAGGCGATTGTACTGTTTACGTAGCTTGCGATTTGTGCCCTGAAACGTTCTCTAATATGCAAGTCTTCAATGACCATGCATTAGCAGTTCATGCTGGTAATTTCGAGTCGGATAGCCAGAGCAAATGTGTTGATGGTCGCCCTACCGATTGCCCCTTATGCGGCAAGAAGAACAGCAGCTATCCGAATTTAGTTAAACATTTGAAAATTATACACAACGAGGAGACGCCACATCATTGCCAGCATTGCGAAGCTAAATTCGAACAAGCTGCCGATCTTAATAAGCATATTTACATGGAACATTCTGACAGAACTCTAGGTATGCAAACCTATGCACCAGATTTGTCTTTAGTGAAGGAAGAAGCGGAAGAGTACCATTATTCTTGTACTGAATGTAATGCCATATTTGAAACTGTTGATGCATGGACCGACCATCAGGTAGCTGAACATAATCAAGTGGCACATCATTGCGATCAATGCGATAAGAAATTCTTACGTCCATCTGAGCTTGCTGAACATAAGAACACACACTTGAGAGTCAAGTTTTATCCATGTAGCGTTTGTGCAAACTCTTACAGTACACCTCAAAAGTTATCTGAACATGTACAGCAATGCCATCCAGGTGTGGGCCCCATTGCTGCTGGTGAAGCTGAATTTTTCTGTGATCTCTGTATCAGAGCATTCAAAAGTCGCCAAGCGTATTCCAACCATATGCGTATACATTCGAAAATACCTACTACAAATAGAAAACCTGGTGATACTTTTAATAAAGGATTTTCACCATCGATCATAGGTAAACCTATCAAACAAATAATGCCGATAGTTCATCCTGGTTTTGTATCATTCAAACCGACTACTAACTACAATATTCCAAATGCTCCATATTCGTGTGACATATGTGGAAAAGGATTCAtgcataagaaaaatatttggaaGCATAAGAAAGTTTTGCATGCTGATTTACTAAATGATAGAAATGATAGTGAAGAGAATACAATGCAAGCTTCTACTGAGGAAGAAGAGTTTAATCCAGATGAAAATGGCTCGTTATTGTCCACTCCACAATTCAATAGCTTCAATTTTACTAATTTTACGAATAATGTTCAGCAAACTCCACAAGAACCAATGTCCTATTCCTGCGAGTTATGTTTGAAAAAATTCCCTCTTAGGACTAGTTTGTGGAAGCACAAGCGCGCTAAACATGgcattgtcaattttaattctAACGAAACACAATCTCCATCGGCGAGTGGTGATGGCGGTGGTAGTAGCAGATCCAGTTGCACCATATGTAGAATTACCTTTTCAGATAAGAAATCTTATTATCGTCATCGAAAGAATGTTCATAAGTCCACGGTACAGATGTGTAAAATATGTGGAAAGCCGCTAAGTTCTACATTGGAATTATATGAACATTTAAAAGCCGCTCATGCCAGAGAATTGCTAGGCTACAATGCCAATCAGGGTTCAAATAAAACTCAGGAAATAGTGCAAGAAGTGGAGCCCGATTATGAAAATGACCAAGAATCTGTGGATCCAAGTGTCGATTATCAAGCTCGTTATCCATGCGATGTTTGTGGCAAACAGTTTGTGGGCTTATTAGCATTGCAAAATCATCAGTGTATTAATCAAGTACCATCACAGCCTCAAACCTTCGATTGTGAGATCTGTCACAAGAGTTACACCTCAATATCAGCACTTAAGAGCCATCGGGGTTGGCATTTACGTTCACCGGATGGTAAAGCAGCTGCCAACAACAGCGGTCTATGGATGCCTCAGCACAAAGTTACGAGTAAAATAAGTAAACATGAAGTACTCGATCCATCGCAACTTGCTAAAGTTACTCATATAACTCCCCCTACTAGTATACCAGTCAAAAGAAGGTTACCACCAGAGGTTGAGGTCACAGTTGTAAATCCAAATAAGAAAATGCGTTCTGATGATTCAGTTGAATTGGAACAACAAAATTCTGGCTCAAATGAAGACAAATATTGTACGATTTGTGATAAGGAATTTACTAAACGAGCCGCTTATCAACGCCACATGGACGAGGTCCATCAACCGAATTCTGTGTTTTGTCCAGTTTGTGACAAGAGCTTCACAAGAAAATCGACATTGCTTATTCATATGAAGAAACATTATGAAAGTGGTGAGGGCAGTTCAACCACGCTAGGGCCAGGAGAAGAAGAAACGCACACATGTGATTTGTGCGGAGCTCAGTACGACGATGAACAGGCGCTTCGATCTCATCGAGTGAGACATCACGGGGAAGAATCCGAAGAAGACGATGACTTTGATGATGGGCATGTGCCCATTCCTCCTCCGGGAGAATTTACATGCGGCCAATGTGGAGATGGAGTAGCAACACCCAGGGATTTGATTGCCCATCGTACAATGCATTCAACGCCTACAAAATTCTTTTGTAACATATGCAAAGTATATTTTGCGAGGGCATTGGACCTCTCGTCTCACACGAGGGCTAGACATGCAGACAATGACAAGGTATTTTTTCCTTGCGCCATGTGCGATCGATTTTACATGAACAAGAAGAGTTTACAGCGGCACATTGAAACGACCCATTGA
Protein Sequence
MNVNYDRVCRLCLSSRGELLPIFATTSSDDSEPPVLASKIKDCVSVQINENDDLPTNVCKKCLDNVNNWHIFKNVCERTQNKLQSLISKDGSQLEEVQIKSEPLSDEIYDDGVVIDGSYPDSENTTIANKVQPEGPPILASLGLTPRSDKKCVDPRMDWHRVHAILDMVQEDDVIDSLQSKEECDVLQQSDHDSDTETELQPDIEDAYVDCKNGFICKNKKVLSKHPQVSPSMNNVKIKEVIHLRKSKTTLPKQNCPRPKNAWQLLFTDDLLELIVTSTNDNILKNHRNSSIITNVSEIKTLIGILYMHSIMRPTHQKYSDLWNSKCGVPCVSSSMEHERFQYLLQNISFDKEDGDSIIQYDIMKRMRKVFEIFAMNSRTAHIVENTVVIDEIIVPVYGPCPFRYNIDKKPLKRGIKMVLLVDSSTFYVSNLDVITDRYFSADEITKKLVQHLVGTGRTIVMDSWYTSFSLIELLKNNYQLFSIAALNPNSDWIPPLFYSKYRKARTFMSGFINEDVLLTSYVNSELKSINVITNEPHYYRKAHVNQTTVVSVYKKNQSAVEVIDVVMNYYTTMQHTNDWTLSLFFTLLNIATVNAQGVESEKDEEEEEEEEEEEMNEPVQPLAKVPHMPEVSITVMRPTGETLHARQGIHQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITPKKPYPSFQPKLRPNPFNPKARLMPNPISHKMQFMNKNIPAKIVSMNKVITPQKPIPIKSAKTPQNNLPYPLRIKALKDLQIKKKEPQILKSLLTSKPEVLVSEPEILNSAPESPETLISEPEIASFQVEAILSEPDMDGYDQVQGDEEVDGEMHNNQSQNYDTVDINSESEIEIARQQNNYNEGEEEQILGDENIDQDDDNVDGGQSDNDHEGIDEAESQEHMENEDGLEIKTENELKDSEEGQDEREHEEEMNHDENEDDDDDLPIPLQPVVEINEEVNPFNSVMPDEEEEPLENADPNETIEEEEAKDIDPDKVYVTKAQRDFILKYRDVIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTDLWKIIYNENGITDDMVLEDEPKEVKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSRVPLACVHCRARFKDKSLLKKHIRKGDCTVYVACDLCPETFSNMQVFNDHALAVHAGNFESDSQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHNEETPHHCQHCEAKFEQAADLNKHIYMEHSDRTLGMQTYAPDLSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCANSYSTPQKLSEHVQQCHPGVGPIAAGEAEFFCDLCIRAFKSRQAYSNHMRIHSKIPTTNRKPGDTFNKGFSPSIIGKPIKQIMPIVHPGFVSFKPTTNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMQASTEEEEFNPDENGSLLSTPQFNSFNFTNFTNNVQQTPQEPMSYSCELCLKKFPLRTSLWKHKRAKHGIVNFNSNETQSPSASGDGGGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSNKTQEIVQEVEPDYENDQESVDPSVDYQARYPCDVCGKQFVGLLALQNHQCINQVPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVLDPSQLAKVTHITPPTSIPVKRRLPPEVEVTVVNPNKKMRSDDSVELEQQNSGSNEDKYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSTTLGPGEEETHTCDLCGAQYDDEQALRSHRVRHHGEESEEDDDFDDGHVPIPPPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARALDLSSHTRARHADNDKVFFPCAMCDRFYMNKKSLQRHIETTH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00017541;
90% Identity
iTF_00931734;
80% Identity
-