Ldis038565.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063467.1:878987-882258[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 2.8e+02 3.1 0.1 19 44 137 162 129 165 0.87 2 13 0.00056 14 7.3 0.1 21 52 167 198 163 198 0.89 3 13 0.0015 36 6.0 0.1 21 47 195 221 193 225 0.91 4 13 0.003 73 5.0 0.0 18 51 248 281 246 284 0.85 5 13 0.032 7.8e+02 1.7 0.0 21 52 279 310 275 312 0.83 6 13 0.051 1.2e+03 1.1 0.0 21 48 307 334 302 338 0.85 7 13 0.008 1.9e+02 3.6 0.0 21 51 335 365 327 368 0.84 8 13 0.01 2.5e+02 3.3 0.3 21 44 391 414 386 425 0.77 9 13 0.31 7.5e+03 -1.5 0.0 22 46 420 444 414 447 0.82 10 13 0.01 2.5e+02 3.3 0.0 22 47 448 473 443 478 0.85 11 13 0.009 2.2e+02 3.5 0.0 21 52 475 506 472 508 0.87 12 13 0.0093 2.3e+02 3.4 0.1 21 43 531 553 526 562 0.80 13 13 0.044 1.1e+03 1.3 0.4 23 52 561 590 555 591 0.83
Sequence Information
- Coding Sequence
- atgacaGATGAAAAACTCAACACAGATTATACAGAAACGGGCATTATTGTTAAAATTGAAAGACTCGGTGAAGAAAGAGAAGATACATCAAACTACAGTTCAAATTGTAACTTCGCTTACAAATCTGATGAAGTGAACGTTCAAGATAtacaacctgatattataaacaTTAATTGTACGAGGTCGAGTGATAGCACGTTAATAAAGTCTGTGGAGATATCGAAGGAAATAAATTTAGATTGTGTTGAAAGCAACGCAGTTCTACAGAATCCAAAACTAAACGAATCTGGTAACATTAGAAGAGCTGCATCAAATAAATCTAAAACGACAGCTactttagaaaataataaaaaatgcaaaACCAATAAGTCAATTGAAGACAAACAAAAAGTTAATAGAACAAGTGTAAAAAATTGTGAAAATCCTTTTAAATGTGATATATGTGGCAAACGTTTTAAACGGACGCAACATTTAAAGCAACATATGTGTGCGCACACCGGTGAGAAACCTTATAAGTGTGACATGTGTGAAAAGACTTTCAATCAAAAACATCATTTAACACGACACATTCATCTGCACTCTGGTGAAAAACCTTATAAATGTGATATTTGTGAAAAACTTTTCAGCCTTAAGCATAATTTAAAACAACATATTCGTTTGCATACAGGTGAAAAACGTTTTAAATGTGATATGTGTGAGGAAGCTTTTTATGAAAAGCATCACTTAATATTGCACTTACGTCGACATACTGGCGAGGAACCATACAAATGCGACATAtgtgataaaatttttaatagaaATGAAGATTTAAAAGTGCATGTTCGGATGCACACCGGTGAAAAACCTTTTAAATGTGGTATATGTGAAAAACTTTTCAACTTAAAGTATAGTTTAAAACTACATATTCGTTTACATACTGGCGAAAAACCTCTTAAATGTGATATGTGTGATAAAACTTTTAATAGAAATCAAGATTTAAAAGTGCATGTTCGGATGCACACCGGTGAAAAACCTTTTAAATGTGATATATGTGAAAAACTTTTCAGCATAAAGCGTAGTTTAAAACTACATAATCGTTTGCATACTGGCGAAAAACCTTTTAAATGTGATATGTGTGATAAAAGTTTCGCTCACAAGCATTCTTTAatgtatcataaaaatatacacacagGTGAAAAGCCTTATAAATGTGATATATGTGACAAGTGTTTTAGGCGAAGACAAGATTTATTTTCGCATAATCGTAGGCACACCGGTGTTAAACCTTTTAAATGTGATTTGTGTGAGGAAGCTTTTTATCAAAAGGATCACTTAATATTGCACTTACGTCTACATACTGGCGAGATACCATACAAATGCGACATATGTGATAAAACTTTTAatagaaaacaaaatttaaaagtgCACGTTTGGATGCACACCGGTGAAAAACCTTTTAAATGTGATATTTGTGAAAAACTTTTCAGCTTAAAGGGTAGTTTAAAACGACATAATCGTTTGCATACTGGTGAAAAACCTTTTAAATGTGATATGTGTGATAAAAGTTTCACTCTAAAACAACATTTAATGTTTCATAAAAATATGCACACCGGTGAAAAGCCGTATAAATGTGATATATGTGACAAGTGTTTTAGGCGAAAACAAGATTTATTTTCGCATAATCGTAGGCACACCGGTGTAAAGCCGTATAAATGTGATATTTGTGAAAAACATTTTCCCTTAAAGTATTCTTTAAAACGACATATCCGTTTGCATACCGACGAAAAaccttttgatgtgaaatatctgtag
- Protein Sequence
- MTDEKLNTDYTETGIIVKIERLGEEREDTSNYSSNCNFAYKSDEVNVQDIQPDIININCTRSSDSTLIKSVEISKEINLDCVESNAVLQNPKLNESGNIRRAASNKSKTTATLENNKKCKTNKSIEDKQKVNRTSVKNCENPFKCDICGKRFKRTQHLKQHMCAHTGEKPYKCDMCEKTFNQKHHLTRHIHLHSGEKPYKCDICEKLFSLKHNLKQHIRLHTGEKRFKCDMCEEAFYEKHHLILHLRRHTGEEPYKCDICDKIFNRNEDLKVHVRMHTGEKPFKCGICEKLFNLKYSLKLHIRLHTGEKPLKCDMCDKTFNRNQDLKVHVRMHTGEKPFKCDICEKLFSIKRSLKLHNRLHTGEKPFKCDMCDKSFAHKHSLMYHKNIHTGEKPYKCDICDKCFRRRQDLFSHNRRHTGVKPFKCDLCEEAFYQKDHLILHLRLHTGEIPYKCDICDKTFNRKQNLKVHVWMHTGEKPFKCDICEKLFSLKGSLKRHNRLHTGEKPFKCDMCDKSFTLKQHLMFHKNMHTGEKPYKCDICDKCFRRKQDLFSHNRRHTGVKPYKCDICEKHFPLKYSLKRHIRLHTDEKPFDVKYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00931712;
- 90% Identity
- iTF_00931712;
- 80% Identity
- iTF_00931712;