Basic Information

Insect: Lymantria dispar
Gene Symbol: -
Assembly: GCA_032191425.1
Location: CM063467.1:878987-882258[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.7e-06 0.00044 21.9 6.5 1 23 143 165 143 165 0.98

2 16 2.1e-05 0.0025 19.5 8.3 1 23 171 193 171 193 0.98

3 16 8.3e-06 0.00099 20.8 2.9 1 23 199 221 199 221 0.99

4 16 0.00017 0.02 16.7 3.6 1 23 227 249 227 249 0.99

5 16 8.3e-08 9.9e-06 27.1 0.4 1 23 255 277 255 277 0.99

6 16 7.8e-05 0.0093 17.7 1.0 1 23 283 305 283 305 0.98

7 16 5.9e-07 7.1e-05 24.4 1.0 2 23 312 333 311 333 0.97

8 16 0.001 0.12 14.2 1.5 1 23 339 361 339 361 0.98

9 16 4.6e-05 0.0055 18.5 5.6 1 23 367 389 367 389 0.98

10 16 6.3e-06 0.00076 21.2 5.6 1 23 395 417 395 417 0.99

11 16 1.4e-05 0.0017 20.1 1.2 1 23 423 445 423 445 0.98

12 16 1.1e-06 0.00013 23.6 0.8 1 20 451 470 451 473 0.94

13 16 7.2e-05 0.0086 17.8 1.4 1 23 479 501 479 501 0.98

14 16 0.003 0.36 12.8 4.8 1 23 507 529 507 529 0.96

15 16 4.2e-06 0.0005 21.7 5.8 1 23 535 557 535 557 0.99

16 16 3e-06 0.00036 22.2 2.8 1 23 563 585 563 585 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.7e-06	0.00044	21.9	6.5	1	23	143	165	143	165	0.98
2	16	2.1e-05	0.0025	19.5	8.3	1	23	171	193	171	193	0.98
3	16	8.3e-06	0.00099	20.8	2.9	1	23	199	221	199	221	0.99
4	16	0.00017	0.02	16.7	3.6	1	23	227	249	227	249	0.99
5	16	8.3e-08	9.9e-06	27.1	0.4	1	23	255	277	255	277	0.99
6	16	7.8e-05	0.0093	17.7	1.0	1	23	283	305	283	305	0.98
7	16	5.9e-07	7.1e-05	24.4	1.0	2	23	312	333	311	333	0.97
8	16	0.001	0.12	14.2	1.5	1	23	339	361	339	361	0.98
9	16	4.6e-05	0.0055	18.5	5.6	1	23	367	389	367	389	0.98
10	16	6.3e-06	0.00076	21.2	5.6	1	23	395	417	395	417	0.99
11	16	1.4e-05	0.0017	20.1	1.2	1	23	423	445	423	445	0.98
12	16	1.1e-06	0.00013	23.6	0.8	1	20	451	470	451	473	0.94
13	16	7.2e-05	0.0086	17.8	1.4	1	23	479	501	479	501	0.98
14	16	0.003	0.36	12.8	4.8	1	23	507	529	507	529	0.96
15	16	4.2e-06	0.0005	21.7	5.8	1	23	535	557	535	557	0.99
16	16	3e-06	0.00036	22.2	2.8	1	23	563	585	563	585	0.99

Sequence Information

Coding Sequence: atgacaGATGAAAAACTCAACACAGATTATACAGAAACGGGCATTATTGTTAAAATTGAAAGACTCGGTGAAGAAAGAGAAGATACATCAAACTACAGTTCAAATTGTAACTTCGCTTACAAATCTGATGAAGTGAACGTTCAAGATAtacaacctgatattataaacaTTAATTGTACGAGGTCGAGTGATAGCACGTTAATAAAGTCTGTGGAGATATCGAAGGAAATAAATTTAGATTGTGTTGAAAGCAACGCAGTTCTACAGAATCCAAAACTAAACGAATCTGGTAACATTAGAAGAGCTGCATCAAATAAATCTAAAACGACAGCTactttagaaaataataaaaaatgcaaaACCAATAAGTCAATTGAAGACAAACAAAAAGTTAATAGAACAAGTGTAAAAAATTGTGAAAATCCTTTTAAATGTGATATATGTGGCAAACGTTTTAAACGGACGCAACATTTAAAGCAACATATGTGTGCGCACACCGGTGAGAAACCTTATAAGTGTGACATGTGTGAAAAGACTTTCAATCAAAAACATCATTTAACACGACACATTCATCTGCACTCTGGTGAAAAACCTTATAAATGTGATATTTGTGAAAAACTTTTCAGCCTTAAGCATAATTTAAAACAACATATTCGTTTGCATACAGGTGAAAAACGTTTTAAATGTGATATGTGTGAGGAAGCTTTTTATGAAAAGCATCACTTAATATTGCACTTACGTCGACATACTGGCGAGGAACCATACAAATGCGACATAtgtgataaaatttttaatagaaATGAAGATTTAAAAGTGCATGTTCGGATGCACACCGGTGAAAAACCTTTTAAATGTGGTATATGTGAAAAACTTTTCAACTTAAAGTATAGTTTAAAACTACATATTCGTTTACATACTGGCGAAAAACCTCTTAAATGTGATATGTGTGATAAAACTTTTAATAGAAATCAAGATTTAAAAGTGCATGTTCGGATGCACACCGGTGAAAAACCTTTTAAATGTGATATATGTGAAAAACTTTTCAGCATAAAGCGTAGTTTAAAACTACATAATCGTTTGCATACTGGCGAAAAACCTTTTAAATGTGATATGTGTGATAAAAGTTTCGCTCACAAGCATTCTTTAatgtatcataaaaatatacacacagGTGAAAAGCCTTATAAATGTGATATATGTGACAAGTGTTTTAGGCGAAGACAAGATTTATTTTCGCATAATCGTAGGCACACCGGTGTTAAACCTTTTAAATGTGATTTGTGTGAGGAAGCTTTTTATCAAAAGGATCACTTAATATTGCACTTACGTCTACATACTGGCGAGATACCATACAAATGCGACATATGTGATAAAACTTTTAatagaaaacaaaatttaaaagtgCACGTTTGGATGCACACCGGTGAAAAACCTTTTAAATGTGATATTTGTGAAAAACTTTTCAGCTTAAAGGGTAGTTTAAAACGACATAATCGTTTGCATACTGGTGAAAAACCTTTTAAATGTGATATGTGTGATAAAAGTTTCACTCTAAAACAACATTTAATGTTTCATAAAAATATGCACACCGGTGAAAAGCCGTATAAATGTGATATATGTGACAAGTGTTTTAGGCGAAAACAAGATTTATTTTCGCATAATCGTAGGCACACCGGTGTAAAGCCGTATAAATGTGATATTTGTGAAAAACATTTTCCCTTAAAGTATTCTTTAAAACGACATATCCGTTTGCATACCGACGAAAAaccttttgatgtgaaatatctgtag
Protein Sequence: MTDEKLNTDYTETGIIVKIERLGEEREDTSNYSSNCNFAYKSDEVNVQDIQPDIININCTRSSDSTLIKSVEISKEINLDCVESNAVLQNPKLNESGNIRRAASNKSKTTATLENNKKCKTNKSIEDKQKVNRTSVKNCENPFKCDICGKRFKRTQHLKQHMCAHTGEKPYKCDMCEKTFNQKHHLTRHIHLHSGEKPYKCDICEKLFSLKHNLKQHIRLHTGEKRFKCDMCEEAFYEKHHLILHLRRHTGEEPYKCDICDKIFNRNEDLKVHVRMHTGEKPFKCGICEKLFNLKYSLKLHIRLHTGEKPLKCDMCDKTFNRNQDLKVHVRMHTGEKPFKCDICEKLFSIKRSLKLHNRLHTGEKPFKCDMCDKSFAHKHSLMYHKNIHTGEKPYKCDICDKCFRRRQDLFSHNRRHTGVKPFKCDLCEEAFYQKDHLILHLRLHTGEIPYKCDICDKTFNRKQNLKVHVWMHTGEKPFKCDICEKLFSLKGSLKRHNRLHTGEKPFKCDMCDKSFTLKQHLMFHKNMHTGEKPYKCDICDKCFRRKQDLFSHNRRHTGVKPYKCDICEKHFPLKYSLKRHIRLHTDEKPFDVKYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00932088;
90% Identity: iTF_00932088;
80% Identity: iTF_00932088;