Ldis042896.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063471.1:5551396-5555414[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.31 37 6.4 0.6 1 23 60 82 60 82 0.94 2 30 0.32 39 6.4 0.4 2 23 110 132 109 132 0.95 3 30 0.047 5.6 9.0 1.6 2 23 153 175 152 175 0.96 4 30 0.0066 0.78 11.7 2.3 1 23 180 203 180 203 0.96 5 30 0.057 6.8 8.7 1.2 1 23 207 230 207 230 0.90 6 30 0.46 55 5.9 0.8 2 23 233 255 232 255 0.94 7 30 2.3 2.7e+02 3.7 0.0 2 20 261 279 260 281 0.92 8 30 0.002 0.24 13.3 3.2 1 23 329 352 329 352 0.93 9 30 0.0014 0.16 13.8 0.1 1 23 425 448 425 448 0.96 10 30 0.00013 0.015 17.1 0.1 1 23 453 476 453 476 0.97 11 30 8.6e-05 0.01 17.6 0.7 1 23 483 506 483 506 0.95 12 30 0.0029 0.34 12.8 0.3 1 23 511 534 511 534 0.98 13 30 0.0024 0.29 13.1 2.4 1 23 538 561 538 561 0.97 14 30 0.0023 0.27 13.1 1.1 2 23 568 589 567 589 0.97 15 30 0.0071 0.85 11.6 1.1 1 23 595 617 595 617 0.96 16 30 0.015 1.8 10.6 2.9 1 23 667 689 667 689 0.96 17 30 8.5 1e+03 1.9 0.4 2 14 717 729 716 739 0.71 18 30 0.33 40 6.3 2.7 2 23 760 782 759 782 0.93 19 30 0.00013 0.015 17.1 0.4 1 23 787 810 787 810 0.96 20 30 0.0062 0.74 11.8 1.2 1 23 815 838 815 838 0.97 21 30 0.00053 0.063 15.1 0.9 2 23 841 863 841 863 0.97 22 30 0.39 47 6.1 0.6 2 21 871 890 870 891 0.90 23 30 0.0077 0.92 11.5 2.3 1 23 943 966 943 966 0.97 24 30 1.9 2.2e+02 4.0 0.0 2 23 1039 1062 1038 1062 0.91 25 30 2.4e-05 0.0028 19.4 0.2 3 23 1069 1090 1068 1090 0.94 26 30 0.0077 0.92 11.5 2.9 2 23 1095 1117 1094 1117 0.94 27 30 0.00078 0.093 14.6 4.0 1 23 1122 1145 1122 1145 0.94 28 30 0.0001 0.012 17.4 5.4 1 23 1149 1172 1149 1172 0.97 29 30 0.00012 0.015 17.1 0.2 2 23 1179 1200 1178 1200 0.96 30 30 3e-05 0.0036 19.0 1.4 1 23 1206 1228 1206 1228 0.97
Sequence Information
- Coding Sequence
- ATGATATTAGATAATAACACATTTATACGCCCATTATTGAAGAAATACAATAGAGTCCATTTCTTTTCAGATTTACAAAGAGAACCATCAAAGAAAAGTGCTAATTTTCTAAGGAGGAGGAACCTTCTTATTCTATTCAACAACACAACATTGATACCGTTTAAATGGCGAGGAAAATATTTGTGTTTCTATTGCGGAGATGCTGTTGATAATTACAAAAGCCTCCGTAAGCATACGGACAGTCATGGCCACTGTTCTGACAAAGATCGGGCATTAAGACTCGTTAAATCAGCTGATACGGAGACTAAAATTGATGTGTCTAATGTGACGTGTAATTTGTGCTCCAATTCCTTTGGACATTTAGAGGAAGTCATTAATCATTTGATTTCTAAACATGAATTACCTTACACGAAAAGTATTAAATTAATGATAGCGGCTTATAAGCTGCTAGATTTGCAGTGCCTGCTTTGTGATAAACTATTCGATTACTTTCCGAAATTAGTCTCGCATATGAATACTTGCCATCCTAGTGACTGTTTCTCTTGTCGTGAATGTGATCAAATGTTCAACAAGAAACGAGATTTAGATACTCATTCTAGGAACTACCACAGAAATGAATATTCATGTATGAAATGCAACGAAATATTTGCTTCTAACTCAGCGTTGCGATTCCACAGATTGCACGCACACCCATCTACTTGTAATATATGCCTACAATCCTTTTCATCAGATATAAAGCGGTTAAGTCACATGAAAAACGAACACACATCTGATCAAGTCAAATGTGGGCTTTGTGAACAAGTTTTGTCGACAAAACAGGCTGTTTTACGTCACGCGTCAAAATGTACAGCGGCAAAAGATAGACTTGAAACCATCGTTGTGGATGATGAGATAAAGAAAGTGTCAACTAAAGATATTCGCAGTTGCATTGCTACTATTATAAACATGTCCACAGCGTTACCGTTTAAATTTTTCATGAGTAAATTCAGGTGTTTCTATTGCTCCAAAGATTTCTCAACTTGTGACACTTTAAAGGAACATACTATTGCAGAACATCCTCGTTGCGATGTTGGCGATAAATGTATGAAATTACGCAACAGATATGACGGCAGTAAAATCAAAATTGATACATCAGATCTTTCTTGCAAATTATGCTTTGAGCCGTTAGCAGATTTGAACGTTTTAATAGAACATTTGACTGTAGAACACAAAGTCAAATGCCACACATACGTCGAAAACAACCTACAGCCATTTAAACTGATTAAAAATAACTATCCTTGTCCATTATGTGATGAAGTTTATAGATATTTTGGATTGTTACTAAAGCATGTTAGTAAAATTCATACaggcaataaatatatttgcgTATACTGTGGACAGCCATTCAGGACTGATCCGAATCTTCGCGCTCATGTCATGAGATACCACCCTGTTTCCTCTGACAAATATAGATGCAATCAATGCGATTTGATTTTCAccacttataacaatttaaagaTCCATTTAGGCAGGGATCACGGCATAAAATTGTACAAATGTGTAGAATGCGCGGATAAATTTGCTACACAATATTGGATGCAACGTCATATGCTTACAGTACATGGCGAAGGGCATAAATGTGTTTACTGCGATAAGGCATTTATAAAGTATTCTTTTATGGTGAACCATGTCAGAAGACTTCATTTAAAAGAGAGAAATGTAAAGTGTAAAGTATGCTCCGAAAGCTTCTTCGATCGTCAAAGACTAAAAGTGCACATGGTTAAGCACGTTGGAGAAAGGAATTTTCATTGCGATATTTGTGGCAAAAAGTTTCTCTGGAAAAGAAATTTGAGGGCGCATATCGCTTCACATATTAAGAACTCCAATAATCCACAAGAAAATTTCTTTTCAGATGAATTGCCAGGACCATACGGAGGATGTACCTCTGAAAGGAGACGAAAAAATCTGAAAACACTTTTCGACAACACCTCAATAATGCCATTCAAATGGCGTGGCAAATATCTTTGCTTCTATTGTGGCAAGAATTATACGGAATATTTAGAGTTTAAAAAGCATACGAAATCTCACGGTCTATGCAATACTAAAGATTATTCATTGAAATTAATCAAAGGAAATAACATTGAGATTAAAATTGATGTATCTGAAATAGTTTGTGATATATgcaatgaaaattttaattgttttgatgAAATAATTGAACATTTGATCGGTAAACATAACTTAGATTACAACAAAAGCATTGATATTCCTTTTCAAGAATATCGCCTAGTGGATTGTAGTTGTTTACACTGCGAAGAGAAATTTGCTTATTTTGGATATTTAGTGACACACGTGAATAACATGCATCCTCAAAATTGTTTCATTTGTAATGATTGTGGTGGTCGTTTTAACAAAAAGAGGGATTTAGCTATACATATAAGGAATTACCATCGTGAGGGAGGCTATCCATGCGATTCGTGCCTTCAAACTTTTGAAACTCTTCAATCTTTGAGAAGACATAAAAATAGTACGCATTTTAGGCAATGCAAAAGCTGTAATTTGAGATTCGCATCGTTATCTTTACTGCAAAAACATTTACAGGTCTCGCACCCTCACGAAGAAGGTAATTTGAAGTGCATTTATTGCTCAAAAGAATTCCATTCATCTATAGGTTTACGGCAGCATATaagtaaatgtaaaataaaaattaattcacaagTCGAATTGGATAATTTTCCGGAAGACAGTTTGGAGCCCCGAAAAAAACAGAATATACAACAAATTCGTCAAAATATACAATGTGTGTTGAACATGTCAACAGCGGTTCCTTTCAAATTTTTCTCTAAATATTCATGCTTTTATTGTTCGAAAAAGTTCTTTGAATTTGAAGATCTACGGCAGCATACAAATGTTGAGCATCCTATATGTGATCTCAAACAAAAATGCATGCAAAAGTGCAAAGGTGAAAGAATCACTGTTAAAATAGATATATCTGCTTTAGCGTGTAAACTATGTTCATTGCCAATGCTCAATTTAGAATCTCTAATTGATCATTTAATACTAGAACATAAAGCAAATTATGATAAGTCGATCACGGGCAGTCTTGAGCCTTTCAGAATCATCAAAGACAATATGCCGTGTCCTATATGTCCTGATAAAGTGTTCAGATATTTTGGTATTTTATTACGTCACTTGAATGCGgaacatagtaataataatagaatttgTGATTTCTGTGGTCGAAGTTTCCGTAATGCAGCAAATTTGAATGTTCATATCACCTATTCCCATACTGGATCTTGTGAATGTGATGTTTGCGGAGTCAAATATAAAAACCAATGGTGTTTAGCTAGACATAGAGCTAAAACTCACAATGCGAAGGACCATAAATGTCCGAAATGCCCAGAAACTTTCAATTCGCAATACCATAAACAAAAGCATTTGATTGAAATGCATAATATCGGTCACAAGTGCGATTATTGCAATAAAATGTTCACCAGAAACAGTTTTATGAAGGATCATGTGAGAAGAACTCACTTGAAGGAGAAAAATGTTCCTTGTCCAATTTGTAATGAGAAATTTTTCGACAACTACCTTCTGAGAATGCATATGGTTAAACATGAGGGTTTTAGGAAATTCTGTTGTACAGTTTGTGGCAAAGCATTCTTGAGAAGAAGCAATTTGGCGTCACATATGGAAATGCATAAAAAATATGGGCACGTTTCTCTTCAATCTATGGCATAG
- Protein Sequence
- MILDNNTFIRPLLKKYNRVHFFSDLQREPSKKSANFLRRRNLLILFNNTTLIPFKWRGKYLCFYCGDAVDNYKSLRKHTDSHGHCSDKDRALRLVKSADTETKIDVSNVTCNLCSNSFGHLEEVINHLISKHELPYTKSIKLMIAAYKLLDLQCLLCDKLFDYFPKLVSHMNTCHPSDCFSCRECDQMFNKKRDLDTHSRNYHRNEYSCMKCNEIFASNSALRFHRLHAHPSTCNICLQSFSSDIKRLSHMKNEHTSDQVKCGLCEQVLSTKQAVLRHASKCTAAKDRLETIVVDDEIKKVSTKDIRSCIATIINMSTALPFKFFMSKFRCFYCSKDFSTCDTLKEHTIAEHPRCDVGDKCMKLRNRYDGSKIKIDTSDLSCKLCFEPLADLNVLIEHLTVEHKVKCHTYVENNLQPFKLIKNNYPCPLCDEVYRYFGLLLKHVSKIHTGNKYICVYCGQPFRTDPNLRAHVMRYHPVSSDKYRCNQCDLIFTTYNNLKIHLGRDHGIKLYKCVECADKFATQYWMQRHMLTVHGEGHKCVYCDKAFIKYSFMVNHVRRLHLKERNVKCKVCSESFFDRQRLKVHMVKHVGERNFHCDICGKKFLWKRNLRAHIASHIKNSNNPQENFFSDELPGPYGGCTSERRRKNLKTLFDNTSIMPFKWRGKYLCFYCGKNYTEYLEFKKHTKSHGLCNTKDYSLKLIKGNNIEIKIDVSEIVCDICNENFNCFDEIIEHLIGKHNLDYNKSIDIPFQEYRLVDCSCLHCEEKFAYFGYLVTHVNNMHPQNCFICNDCGGRFNKKRDLAIHIRNYHREGGYPCDSCLQTFETLQSLRRHKNSTHFRQCKSCNLRFASLSLLQKHLQVSHPHEEGNLKCIYCSKEFHSSIGLRQHISKCKIKINSQVELDNFPEDSLEPRKKQNIQQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFFEFEDLRQHTNVEHPICDLKQKCMQKCKGERITVKIDISALACKLCSLPMLNLESLIDHLILEHKANYDKSITGSLEPFRIIKDNMPCPICPDKVFRYFGILLRHLNAEHSNNNRICDFCGRSFRNAANLNVHITYSHTGSCECDVCGVKYKNQWCLARHRAKTHNAKDHKCPKCPETFNSQYHKQKHLIEMHNIGHKCDYCNKMFTRNSFMKDHVRRTHLKEKNVPCPICNEKFFDNYLLRMHMVKHEGFRKFCCTVCGKAFLRRSNLASHMEMHKKYGHVSLQSMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00405245; iTF_00707184;
- 90% Identity
- -
- 80% Identity
- -