Equa029886.1
Basic Information
- Insect
- Euplagia quadripunctaria
- Gene Symbol
- -
- Assembly
- GCA_963859945.1
- Location
- OY982586.1:5683771-5688487[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 5.1 5.1e+02 2.4 3.3 1 23 46 68 46 68 0.94 2 29 0.013 1.3 10.6 0.1 2 23 96 118 95 118 0.95 3 29 0.0091 0.91 11.1 0.5 2 23 139 161 138 161 0.96 4 29 0.0034 0.34 12.4 2.6 1 23 166 189 166 189 0.94 5 29 0.72 72 5.1 4.0 1 22 193 214 193 216 0.85 6 29 0.1 10 7.8 0.8 2 23 219 241 218 241 0.95 7 29 0.0031 0.31 12.5 3.4 1 23 315 338 315 338 0.94 8 29 0.0055 0.55 11.8 0.5 1 23 411 434 411 434 0.97 9 29 7.5e-05 0.0075 17.6 1.1 1 23 439 462 439 462 0.97 10 29 0.00049 0.049 15.0 0.5 1 23 469 492 469 492 0.95 11 29 0.0015 0.15 13.5 0.4 1 23 497 520 497 520 0.94 12 29 5.4e-06 0.00054 21.2 1.4 1 23 524 547 524 547 0.98 13 29 0.013 1.3 10.6 2.0 2 23 554 575 553 575 0.97 14 29 0.066 6.6 8.3 1.7 1 23 581 603 581 603 0.96 15 29 0.0031 0.31 12.5 2.3 1 23 648 670 648 670 0.96 16 29 0.01 1 10.9 0.0 2 23 698 720 697 720 0.94 17 29 0.012 1.2 10.6 2.2 1 23 740 763 740 763 0.96 18 29 0.00011 0.011 17.1 0.4 1 23 768 791 768 791 0.96 19 29 0.00078 0.078 14.4 1.1 1 23 796 819 796 819 0.96 20 29 0.00052 0.052 15.0 1.0 2 23 822 844 822 844 0.97 21 29 0.22 22 6.7 1.8 2 20 852 870 851 872 0.92 22 29 0.0095 0.95 11.0 2.4 1 23 924 947 924 947 0.96 23 29 2.9 2.9e+02 3.2 0.0 2 23 1020 1043 1019 1043 0.88 24 29 2e-05 0.002 19.4 0.2 3 23 1050 1071 1049 1071 0.94 25 29 0.022 2.2 9.8 5.2 2 23 1076 1098 1075 1098 0.94 26 29 0.00061 0.061 14.8 5.1 1 23 1103 1126 1103 1126 0.96 27 29 2.3e-05 0.0023 19.2 4.0 1 23 1130 1153 1130 1153 0.97 28 29 0.00029 0.029 15.8 0.3 2 23 1160 1181 1159 1181 0.96 29 29 8.7e-06 0.00087 20.6 0.3 1 23 1187 1209 1187 1209 0.98
Sequence Information
- Coding Sequence
- atgggcggcggtagtcatttaccatcagGTTCCGAAAGAAAGCCACCAAAGAAAAGTGATAATTATGTAAGGAGGAAGAACCTGCTTGTTCTATTCAACAACACCACATTGATACCTTTTAAATGGCGAGGCAAATACCTGTGCTTCTATTGCGGAAATGAAGTTGATAGTTATAAGCGACTCCGAAAGCACACGCACAACCACGGGCTCTGTTCCGACAGAGATAAAGCCATAAGACTCGTGAAATCGGTCGAttcagaaattaaaattgacGTTTCATATATTAAATGCAAATTATGCTCCCAGTCCTTTGTAGATCTGGACGATATTGTAAACCATTTGATCTCTATACACGATTTATCTTATAAAAAAGATGCTAAATTAACGATAACCACGTACAGACTTATAGATTTACAATGCTTACTTTGCGACGAGAATTTTGATTATTTCCAAAAACTTGTCAGCCATATGAACACTTCACATCCAAACAACTGTTTCTTGTGTACGGAATGCAACCAAATGTTCAACAAAATGCGAGATTTACGCACTCATAGGAGAAATtaccacaaaaaagaatataCGTGCAAAACGTGCAATGAAAGGTTTATTTCCCATGTAGCACTGAGATTTCATAAGTTACATTCTCATCCATCCAGCTGTTACATATGTTACCAAACATTCTCTTCAGAAATAAAACGAATCAATCACATGAAAAACGAACATACGGGTGATAATGTCGAATGTGGGTATTGTAAACAAGTTTTGCCAAATACAAATGCTGTGTTGCGACACGGTCCTAAATGTACTGCAAAAAAAGATCCTGCTCTAGAAACTATCGTGGTTGACGATGAAGAAAAGAAAGTAGCGACCAAAGATCTTAGGAATAGCATCGCTACCATCATTAACATGTCCACTGCCATACCGTTTAAATTCTTCATTAGATTCAGATGTTTCTATTGCTCCAAAGATTTTTCAAATTGCGATGGCTTAAAAGAGCACACAGTCATGCAGCATCCTCAATGTGACGTAGGTGACAAGTGCATGAAGCTCCGCAACAGATATGACggcaataaaatcaaaattgataTTGCATCTCTTTCTTGCAAGCTGTGTTTCGAACCATTGCTAGACTTGAACACGTTAATCGAACATTTGACGACAGAACATAAGGTTCAGTGTCATAAGGCTGTCGAAAGTCACTTGCAgtctttcaaattaataaagaacAACTATTCATGTCCCCTATGTGCCGAAGTTTTCAGATATTTCACTGTGCTTCTTAAACACATGAGTAAGAGTCACACtggtaataaatacatttgcgTGTTCTGCGGCCAATCATTCAGAACTTACCCCAATCTTCGCTCTCATGTCAAGAGACGTCACAAAGTATCTACTACTACGTACGAATGTAACAATTGTGATTTAATTTTCACATCGTATACCAGCCTGAAACTTCATTTGGGAAAAGACCATGACGTCAAAATGTTCAAATGCATCGATTGTCCTGATAAATTTTCTACGCAATACTGGTTACAACGCCATATGCTTCTTGTACATGGAGAGGGGTACAAATGCACTTATTGTGACAAGGCTTTCATTAAAAACTCCTTCCTGGTGAATCATGTGAGGCGGTTGCACCTAAAAGAGAAGAATGTTAAATGCAAGATATGCTTTGAAAGGTTCTTCGATCGGCAAAGACTGAAGATGCACATGGTCAAGCACGTTGGAGAAAGAAATTTCCATTGTGATATTTGCTCGAAAAAGTTTCTGTGGAAGCGCAATCTTAAGGCTCATATTGCTTCACACGTTAGGAACGCGAACGCTCAAACTAATGAATTGCCAGGCCCGTACGGAGGGTGTACCTCTGAAAGGAGAcggaaaaatctgaaaatactCTTTGACCACACCTCAATAATGCCTTTCAAATGGCGGGGCAAATATCTCTGCTTCTATTGCGGCAAGAACTACACAGAGTACCCAGAATTTAAAAAGCATACGAAATCTCACGGCTTATGTAACACACAAGATTATTCTCTAAAATTAATCAAAGGCAATAACATTGAGATTAAAATCGATGTTTCCGAAATCGTTTGTGATATCTGTAACGAAACTTTCAATCGATTTGAAGAAATCATCGATCATTTGATAGTTAAACACCAGTTGGAATACAACAAAAGTATCGATGTACCTTTCCAGGAATATCGATTAGTCGATTTTAGGTGTCTACATTGCGAAGAACGATTTTCTTACTTCGGTTATTTAGTAACGCATGTTAACAACATGCATCCACAAAACTGCTTTATTTGCAATGATTGTGGTGGTCGCTTTAATAAAAAGAGGGATTTAGCTATACATATAAGGAATTACCATCGAGTAGGAGGGTATCCATGTGATTTGTGCTTACAAAGTTTTGACACTTATCAGTCGTTGCGAAGGCATCAGAATAATACCCATTTTAGGCAATGCAAGAGTTGCGGCTCAAAATTTGCCTCTCTATCACTCTTGCAGAAGCATTTGAAATCGGAACATCCTCACGATGAGAGTAACCTGAAGTGCCGTTACTGCTCAAAAGAGTTCCATTCAACCATAGGCTTAAAACAGCACACAAGCAAGTGTAAAGTGAAAATGATATCACAAGCGGAACCAGAATCTTTCCCAGAAGATAATATGGaaccaaaaaagaaacaaaacatacTACAAATTCGTCAAAACATACAATGTGTATTAAATATGTCTACGGCAGTTCCTTTTAAATTCTTTTCTAAATATTCCTGCTTTTACTGCTCAAAGAAATTCTTTGAATTCGACGATTTACGACAGCATACGAGTATTGAACATCCAGTATGCGAATTGAAACAGAAATGCATGAAAAAGTGTAAAGGCGAAAGGATAAACGTTAAGATTGATATCTCAGCTTTAGCTTGCAAAGTATGTTGTCTTCCAGTATTAGATTTGGAAGCTTTAATCACCCATTTAATAGATGAACACAAAGCGAACTATGATAAGTCCATCACTGGATGTCTTGAACCTTTTCGGATCATCAAAGACAATATACCCTGCCCGATATGTCCCGATAAGGTGTTCCGATATTTCGGGATTCTATTACGTCACGTGAATGCCGAGCATAGTAACAATAACAGGATTTGTGACTTCTGCGGCCGAAGTTTCCGGAATGCGGCTAATCTAAACGTTCACATAACATATTCACATACAGGCTCTTGTGAATGCGATGTTTgtggtattaaatataaaaaccaatGGTGTCTAGCTAGACATAGAGCTAAATGCCATAACGCGAAAGATCATAAATGTCCAAAATGCCCAGAGACTTTCAATTCACAGTACCATAAACAGAAACATCTGATAAAAATGCATGATATAGGCCATAAATGTGATTACTGCGATAAAATGTTCACCAGAAATTCCTTCATGAAGGATCATGTTCGACGAATTCATTTGAAGGAAAAAAACGTTCCTTGTTCTATTTGTAACGAGAAGTTTTTCGATAACTATCTTTTGAGGATGCATATGGTTAAGCACGAGGGGGACAGGAAGTTTTCTTGTTCGGTATGTGGCAAGGCGTTCTTGAGGAGGAGCAATTTGGCTTCGCATATGGAAATGCATAAAAAGTATGGTCACGTTCAGTTGCAGATTTGA
- Protein Sequence
- MGGGSHLPSGSERKPPKKSDNYVRRKNLLVLFNNTTLIPFKWRGKYLCFYCGNEVDSYKRLRKHTHNHGLCSDRDKAIRLVKSVDSEIKIDVSYIKCKLCSQSFVDLDDIVNHLISIHDLSYKKDAKLTITTYRLIDLQCLLCDENFDYFQKLVSHMNTSHPNNCFLCTECNQMFNKMRDLRTHRRNYHKKEYTCKTCNERFISHVALRFHKLHSHPSSCYICYQTFSSEIKRINHMKNEHTGDNVECGYCKQVLPNTNAVLRHGPKCTAKKDPALETIVVDDEEKKVATKDLRNSIATIINMSTAIPFKFFIRFRCFYCSKDFSNCDGLKEHTVMQHPQCDVGDKCMKLRNRYDGNKIKIDIASLSCKLCFEPLLDLNTLIEHLTTEHKVQCHKAVESHLQSFKLIKNNYSCPLCAEVFRYFTVLLKHMSKSHTGNKYICVFCGQSFRTYPNLRSHVKRRHKVSTTTYECNNCDLIFTSYTSLKLHLGKDHDVKMFKCIDCPDKFSTQYWLQRHMLLVHGEGYKCTYCDKAFIKNSFLVNHVRRLHLKEKNVKCKICFERFFDRQRLKMHMVKHVGERNFHCDICSKKFLWKRNLKAHIASHVRNANAQTNELPGPYGGCTSERRRKNLKILFDHTSIMPFKWRGKYLCFYCGKNYTEYPEFKKHTKSHGLCNTQDYSLKLIKGNNIEIKIDVSEIVCDICNETFNRFEEIIDHLIVKHQLEYNKSIDVPFQEYRLVDFRCLHCEERFSYFGYLVTHVNNMHPQNCFICNDCGGRFNKKRDLAIHIRNYHRVGGYPCDLCLQSFDTYQSLRRHQNNTHFRQCKSCGSKFASLSLLQKHLKSEHPHDESNLKCRYCSKEFHSTIGLKQHTSKCKVKMISQAEPESFPEDNMEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFFEFDDLRQHTSIEHPVCELKQKCMKKCKGERINVKIDISALACKVCCLPVLDLEALITHLIDEHKANYDKSITGCLEPFRIIKDNIPCPICPDKVFRYFGILLRHVNAEHSNNNRICDFCGRSFRNAANLNVHITYSHTGSCECDVCGIKYKNQWCLARHRAKCHNAKDHKCPKCPETFNSQYHKQKHLIKMHDIGHKCDYCDKMFTRNSFMKDHVRRIHLKEKNVPCSICNEKFFDNYLLRMHMVKHEGDRKFSCSVCGKAFLRRSNLASHMEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00931718;
- 90% Identity
- -
- 80% Identity
- -