Cmes030403.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010000970.1:272673-276943[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 2.9 5.7e+02 3.2 3.3 1 23 75 97 75 97 0.94 2 31 2.1 4.1e+02 3.7 0.5 2 23 125 147 124 147 0.87 3 31 0.57 1.1e+02 5.4 1.7 2 23 168 190 167 190 0.96 4 31 0.00025 0.049 16.0 3.6 1 23 195 218 195 218 0.97 5 31 0.12 25 7.5 2.3 1 23 222 245 222 245 0.91 6 31 0.079 16 8.1 0.2 2 23 248 270 247 270 0.96 7 31 1.9 3.8e+02 3.8 0.1 2 20 276 294 275 296 0.92 8 31 0.00024 0.048 16.0 4.7 1 23 345 368 345 368 0.97 9 31 0.32 63 6.2 0.1 2 23 397 419 396 419 0.95 10 31 0.0022 0.43 13.1 0.1 1 23 441 464 441 464 0.96 11 31 0.00024 0.048 16.1 0.5 1 23 469 491 469 492 0.95 12 31 0.00021 0.041 16.3 2.0 1 23 499 522 499 522 0.95 13 31 0.016 3.2 10.3 0.4 1 23 527 550 527 550 0.94 14 31 0.00028 0.056 15.8 3.0 1 23 554 577 554 577 0.97 15 31 0.0023 0.45 13.0 1.4 2 23 584 605 583 605 0.97 16 31 0.071 14 8.3 1.6 1 23 611 633 611 633 0.96 17 31 0.0067 1.3 11.5 3.2 1 23 677 699 677 699 0.96 18 31 0.022 4.3 9.9 0.0 2 23 727 749 726 749 0.90 19 31 0.0053 1.1 11.8 1.9 1 23 769 792 769 792 0.96 20 31 0.00016 0.032 16.6 0.3 1 23 797 820 797 820 0.96 21 31 0.00082 0.16 14.4 1.1 1 23 825 848 825 848 0.96 22 31 0.0011 0.23 13.9 0.6 2 23 851 873 851 873 0.95 23 31 0.065 13 8.4 1.6 2 20 881 899 880 901 0.93 24 31 0.0016 0.32 13.4 3.2 1 23 953 976 953 976 0.97 25 31 3.1 6.1e+02 3.1 0.0 2 23 1049 1072 1048 1072 0.88 26 31 2.1e-05 0.0042 19.4 0.2 3 23 1079 1100 1078 1100 0.94 27 31 0.0039 0.78 12.2 2.8 2 23 1105 1127 1104 1127 0.94 28 31 0.00082 0.16 14.4 5.5 1 23 1132 1155 1132 1155 0.96 29 31 4.5e-05 0.0089 18.4 4.8 1 23 1159 1182 1159 1182 0.97 30 31 0.0003 0.06 15.7 0.3 2 23 1189 1210 1188 1210 0.96 31 31 9.2e-06 0.0018 20.5 0.3 1 23 1216 1238 1216 1238 0.98
Sequence Information
- Coding Sequence
- ATGGACAAAATAGTACGGTTTGCATCGCATGTGATCAATGCTGCTGTTCTATCTAAAACCCTCCTTGCACTATCTTTGTTCCTCCTGAAATACAATAGAGAACATTTCTTTTCAGATtcggaaagagagtcaccaaaGACAAGTGCTAATTCTCTAAGGAGGAGGAACCTGCTTGTTCTATTCAACAACACTACGTTGATACCCTTTAAATGGCGCGGCAAATACCTGTGCTTCTATTGCGGCGATGACGTTGACAGTCATAAACATCTCCGAAATCACACAGAGAGTCACGGACTCTGCTCCGACAGAGATCGAGCTATAAGACTCGTGAAATCGGCAGATTCCGAAACTAAAATCGACGTTTCTTATATAAAATGCAAACTATGCTCACAGTCTTTCGTATGTCTGGACGATATCGTTAACCATTTGATTTCTGCACACGATTTGCCTTACAATAAACAAGCGAATTTGATGCTGACGTCATATAGGCTTGTAGATTTAAAATGCCTACTTTGTGAGCAAAATTATGACTATTTCCCCAAACTTGTCTCCCACATGAACACTTGTCATCCTAACGACAGTTTCTCCTGCGCTGAATGTGAGCATACGTTCAACAAAAAGCGTGATTTAAACACTCATATGAGAAATTATCACCGGAAGGAGTACAAATGTAGTAGATGCAGCGAAGTTTTCGCTTCTAATGTATCGCTGAGATTCCATAGGCTACATTCTCACCCTTCCAGTTGTAATATATGCTACGAAATATTTTCGTCGGATATCGAACGACTCAAGCATATGAAAATTGAACACACAGCTGACCAAGTCCAATGTGGATTCTGTCAGCAAGTTTTGTCCACTAAACAAGCGGTTTTGCGTCACGCGTCTAAATGTACCGCGAAAAGAGACCCTACTATTGAAACTATCATAATAGGTGACGAAGAAAAGAAAATAGCAACGAAAGATCTCAGGAATAGTATTGCTGCCATCATAAACATGTCAACTGCGATACCTTTTAAATTCTTCATGAGCAAATTCAGGTGTTTCTACTGCTCTAAAGATTTCTCGACATGTGACAATTTGAAGGAACACACAATCACCCAACATCCACAATGCGATGTAACTGATAAATGCATGAAACTCCGCAACAGATATGATggcaacaaaatcaaaattgatACAGCCTCTCTTTCTTGTAAGCTGTGCTACGAATCGTTAGACGATCTGAATACTTTGATCGATCATTTGACGACCGAACATAAGGTACAATGTAATAAGTCTGTTGAGAATCACTTACAGTCCTtcaaacttattaaaaataactatccaTGTCCGTTATGCGATGAGGCTTACAGATATTTCGGATTGCTTCTCAAACACGTTAGTAAGAGCCACACTGGGAATAGATACATCTGTGTATTCTGCGGCCAACCGTTCAGGACCGACCCCAATCTTCGAGCTCACGTGATGCGACATCACAGAGTATCCACTAATAGGTATCAATGTAATACTTGCGATTGTATTTTCACGACGTACGCTAACTTGAAGCTTCATTTGGGGAGGGATCACGGTGTCAAAATGTTCAAGTGCATCGAATGCCCGGATAAATTTTCGACGCAATACTGGATGCAGCGTCACATGCTTCTTGTACACGGTGAAGGGCATAAATGCTCATATTGTGACAAAGCTTTTATTAAGTATTCTTTCATGGTAAATCATATTAGACGGCTGCATCTGAAAGAGAAGAATGTCAAGTGCAAAATATGCTCGGAAAGCTTTTTCGATCGGCAAAGGCTGAAGATGCACATGGTGAAACATGTTGGAGAAAGAAATTTCCATTGTGATATTTGCTCGAAGAAGTTTCTGTGGAAGCGTAATCTTAGGGCCCATATCGCCTCACATGTTAGGAACGCGAACGCTCAAGATGAATTGCCAGGCCCGTACGGAGGCTGTACCTCTGAAAGGAGAcggaaaaatctgaaaatacTTTTTGACCACACCTCCATAATGCCTTTCAAATGGCGGGGCAAATACCTCTGCTTCTATTGCGGCAGGAACTACACCGAATACACAGAGTTTAAAAAACATACCAAATCTCACGGCTTATGTAACACTCAAGATTATTCCCTAAAGTTAATAAAAGgcaataatattgaaattaaaatcgATGTATCGGAAATCGTTTGTGAAATCTGTAACGAATCATTTAATCGTTTTGAAGAAATTATCGATCATTTGATCGGTAAACATCAGTTAGAATACAACAAAAGCATTGATGTACCATTCCAGGAATATCGATTAGTTGATTTTAGATGCCTTCATTGCGAAGAGAGTTTCTCTTACTTCGGTTATTTAGTAACGCATGTCAATAACATGCATCCGCAAAATTGCTTCATTTGCGATGACTGTGGTGGTCGATTTAATAAAAAGAGAGATTTAGCTATTCATATAAGGAACTATCACCGTGTGGGAGGGTATCCCTGTGATTTGTGCTTGCAGAGTTTCGACACCTATCAGTCACTACGAAGACATCAAAATAATACACATTTCAGACAATGCAAAAGCTGCGGTTCAAAATTTGCGTCCCTATCTcttttacaaaaacatttaaaagcAGATCATCCGCATGACGAGAGTAATATGAAGTGCCGTTACTGTTCAAAAGAGTTCCATTCGTCGATAGGCTTAAGGCAGCACACAAGCAAATGTAAAGTGAAAATGATATCGCAGGCCGAACCAGAGTCTTTCCTAGAAGACAATTTGGAACCCAAAAAGAAACAGAACATTCTACAAATTCGTCAAAATATACAGTGTGTTTTAAACATGTCCACAGCAGTTCCTTTCAAATTCTTTTCTAAGTTTTCCTGCTTTTACTGCTCAAAGAAATTCTTTGATTTTGATGACCTAAGGCAACATACCAGTACTGAACATCCTATATGCGATTTGGAACAGAAATGTATGAAAAAGTGCAAAGGCGAAAGAATAAATGTTAAGATTGATATTTCGGTATTAGCCTGCAAAGTTTGCTGTCTTCCAATGCAGGATTTAGAAGCTCTAATCGGCCATTTAGTTGACGAACACAAAGCGAACTATGACAAATCTATCAGGGGATGTCTGGAGCCTTTCAGGATCATCAAAGACAATATACCTTGTCCTATATGTCCAGATAAGGTGTTCCGTTATTTCGGGATTTTATTGCGTCACGTTAATGCAGAACATAGTAACAATAACAGAATTTGTGATTTCTGCGGTCGAAGTTTTCGAAATGCAGCTAACTTAAACGTACACATAACGTATTCCCATACAGGCTCATGCGAATGCGATGTCTGTGGTATCAAATATAAGAACCAATGGTGCTTAGCTAGACATAGGGCTAAATCTCATAATGCGAAAGATCACAAATGTCCGAAATGTCCAGAGACTTTCAACTCGCAGTAccataaacaaaaacatttgaTCAAAACGCATAATATAGGACATAAATGCGATTATTGTGATAAGATGTTCACCAGGAATTCTTTTATGAAGGATCATGTTAGGCGAACTCATTTGAAGGAGAAAAATGTCCCTTGTTCTATTTGCAACGAGAAATTCTTTGATAACTACCTTTTAAGAATGCATATGGTGAAGCACGAAGGTGATAGGAAATTTAGCTGTTCCGTCTGTGGCAAGGCATTCTTGAGACGGAGTAATTTGGCATCGCACATGGAAATGCACAAGAAGTATGGACATGTTCAGTTGCAAATTTAA
- Protein Sequence
- MDKIVRFASHVINAAVLSKTLLALSLFLLKYNREHFFSDSERESPKTSANSLRRRNLLVLFNNTTLIPFKWRGKYLCFYCGDDVDSHKHLRNHTESHGLCSDRDRAIRLVKSADSETKIDVSYIKCKLCSQSFVCLDDIVNHLISAHDLPYNKQANLMLTSYRLVDLKCLLCEQNYDYFPKLVSHMNTCHPNDSFSCAECEHTFNKKRDLNTHMRNYHRKEYKCSRCSEVFASNVSLRFHRLHSHPSSCNICYEIFSSDIERLKHMKIEHTADQVQCGFCQQVLSTKQAVLRHASKCTAKRDPTIETIIIGDEEKKIATKDLRNSIAAIINMSTAIPFKFFMSKFRCFYCSKDFSTCDNLKEHTITQHPQCDVTDKCMKLRNRYDGNKIKIDTASLSCKLCYESLDDLNTLIDHLTTEHKVQCNKSVENHLQSFKLIKNNYPCPLCDEAYRYFGLLLKHVSKSHTGNRYICVFCGQPFRTDPNLRAHVMRHHRVSTNRYQCNTCDCIFTTYANLKLHLGRDHGVKMFKCIECPDKFSTQYWMQRHMLLVHGEGHKCSYCDKAFIKYSFMVNHIRRLHLKEKNVKCKICSESFFDRQRLKMHMVKHVGERNFHCDICSKKFLWKRNLRAHIASHVRNANAQDELPGPYGGCTSERRRKNLKILFDHTSIMPFKWRGKYLCFYCGRNYTEYTEFKKHTKSHGLCNTQDYSLKLIKGNNIEIKIDVSEIVCEICNESFNRFEEIIDHLIGKHQLEYNKSIDVPFQEYRLVDFRCLHCEESFSYFGYLVTHVNNMHPQNCFICDDCGGRFNKKRDLAIHIRNYHRVGGYPCDLCLQSFDTYQSLRRHQNNTHFRQCKSCGSKFASLSLLQKHLKADHPHDESNMKCRYCSKEFHSSIGLRQHTSKCKVKMISQAEPESFLEDNLEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKFSCFYCSKKFFDFDDLRQHTSTEHPICDLEQKCMKKCKGERINVKIDISVLACKVCCLPMQDLEALIGHLVDEHKANYDKSIRGCLEPFRIIKDNIPCPICPDKVFRYFGILLRHVNAEHSNNNRICDFCGRSFRNAANLNVHITYSHTGSCECDVCGIKYKNQWCLARHRAKSHNAKDHKCPKCPETFNSQYHKQKHLIKTHNIGHKCDYCDKMFTRNSFMKDHVRRTHLKEKNVPCSICNEKFFDNYLLRMHMVKHEGDRKFSCSVCGKAFLRRSNLASHMEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00931718;
- 90% Identity
- -
- 80% Identity
- -