Basic Information

Insect: Lygus lineolaris
Gene Symbol: -
Assembly: GCA_030264115.1
Location: JAEMON010000012.1:12565700-12567514[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.04 4.2e+02 1.9 0.0 20 44 141 166 135 180 0.80

2 13 0.018 1.9e+02 3.1 0.1 21 44 199 222 191 226 0.86

3 13 0.0025 26 5.8 0.0 21 47 227 253 223 260 0.86

4 13 4.6e-06 0.048 14.6 0.2 19 47 281 309 263 316 0.79

5 13 0.0045 47 5.0 0.2 20 45 338 363 323 371 0.82

6 13 0.075 7.8e+02 1.1 0.1 21 52 367 398 363 400 0.75

7 13 0.42 4.4e+03 -1.3 0.3 23 44 397 418 387 422 0.76

8 13 0.0018 19 6.2 0.0 22 43 424 445 418 451 0.90

9 13 0.0037 38 5.3 0.3 14 44 444 474 435 484 0.73

10 13 0.28 2.9e+03 -0.7 0.1 21 31 479 489 476 501 0.77

11 13 0.00018 1.9 9.4 0.2 5 45 491 531 488 538 0.84

12 13 0.014 1.5e+02 3.4 0.2 21 44 535 558 531 562 0.74

13 13 0.0019 19 6.2 0.1 20 52 562 594 555 596 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.04	4.2e+02	1.9	0.0	20	44	141	166	135	180	0.80
2	13	0.018	1.9e+02	3.1	0.1	21	44	199	222	191	226	0.86
3	13	0.0025	26	5.8	0.0	21	47	227	253	223	260	0.86
4	13	4.6e-06	0.048	14.6	0.2	19	47	281	309	263	316	0.79
5	13	0.0045	47	5.0	0.2	20	45	338	363	323	371	0.82
6	13	0.075	7.8e+02	1.1	0.1	21	52	367	398	363	400	0.75
7	13	0.42	4.4e+03	-1.3	0.3	23	44	397	418	387	422	0.76
8	13	0.0018	19	6.2	0.0	22	43	424	445	418	451	0.90
9	13	0.0037	38	5.3	0.3	14	44	444	474	435	484	0.73
10	13	0.28	2.9e+03	-0.7	0.1	21	31	479	489	476	501	0.77
11	13	0.00018	1.9	9.4	0.2	5	45	491	531	488	538	0.84
12	13	0.014	1.5e+02	3.4	0.2	21	44	535	558	531	562	0.74
13	13	0.0019	19	6.2	0.1	20	52	562	594	555	596	0.83

Sequence Information

Coding Sequence: ATGGATTTGACGACACGATTGGATGTGGAGGAGGATGGAGCACATTCGCAATCACCAAATCCAAACAGCTCCTCTGATAATCACAGAGTCGTTTCAACAGAACGATGTCCATCGAGCAGCGCTGTCCATGAATCTTCTGCAGTTGATGCCAGTAGTTCCAAGGGTGAAGGTGAGCCAATCATCAAGGAGGAAATGGTCATCACGGTGGATCCATACTTTGGTAATGATCCAGAGGCAGACAGTGGAACGGAAGATAATTGTAGGTCTGATGAGAACATCACATCTGACAATGAGATGATCAAGGATCAGTCCAAGAATGATCTAGTCAGGAAGAACAATGGAGGTAAAAAATCCTTTGCCTGTTCAGTTTGTGATTACAAAACCAATAATTTCCGTGATTTGGAGATACATTCGAATTCTCACTCAGGTGAGAAGGAGTATGCTTGTGCCTTTTGTGActataaaacgaaaaaatcctATGATTTGAGGAAACACACAATGACTCATACAGGTGAGAAACCCTATGCTTGCGATCATTGTGGCTACCGatctatttatttcaataatttgaagaTCCACATTAGAACTCACAcaggcgagaagccctatgcctgtaaaCTTTGTAATTATAGGGCTATACAAAGCACCAAATTGAAGACACACATGGTGACTCATACAGGTGAAAAGCCCTTTGCTTGTACTATGTGTGATTACAAAACCAATCATTCCCGTGACTTGAAAAGCCATATAAATACTCACACAGGAGAGAAGCCGTATGCATGTGATAAGTGCGAGTACAGAGCTGTTCAACCACAAAGCTTAAAGACGCACATGGCTACTCACTCAGATGAAAAGCCCTTTACCTGTAATCTTTGTGACTATCGAGCTGGGCAAGTGAAAAATTTGAGGCGTCACATGATAATTCATACTGGTCTGAAACCCTATGCTTGTGATGTTTGTGACTACAAAGCTACTCACCTCGTTAGTTTGAAGAGGCACAAAAAGACCCACACAGGCGAAAAGCCTCATGCTTGTAACGTTTGTGACCACAGAACCGCACAAAGCAGTCAATTGAAGTTACACATGATGACGCACTCTGGCGAGAAACCGTTTGCCTGCGATACTTGCGATTACAGAGCAGTTCACCTCATTACTCTTAGGAGACACATGCAGACGCACACAGGCGTGAAGCCCTACGCCTGCGACATTTGCGATTACCGAGCAGTACAACTTCACACCTTGAAGGCGCACATGGCAACTCACACGGACGATAAGCCCTATACTTGCGATATGTGTGAATACAGAGCGAGGAAATCCCACGATTTGAAGAAACACAAGATGACGCATACGGGTGAGAGACCCTTCGCGTGTGACTTATGCGATTACAGAGCCATCCATCTTAAGAATTTGAAGAGGCACATTTTGACTCATACAGGCGAAAAGCCCTATGCGTGTGACATCTGTGATTTCAGAGCTGTTTATCCTCTAACTTTGAAGAGGCACAGGATGAACCACACAGACGAGAAGCCGTACTCTTGTGACATTTGCGATTATCGAGCTGTTCAACTCATTAATTTGCAGAGACACATCATGACTCACACAGGCGAGAAGCCCTTCGCCTGCACAATATGTGACTATAGAGCCGTTCAACAACAAAGTTTAAAGGCGCACATGTCAACTCATACAGGAGAAAAGCCTTATGCCTGTACGATTTGTGACTACAGAGCTGCACAGCAGAAAAGTTTGAAGGCACACATGAAAACTCACTCTGCTGAAAAGCCCACTTCCTCCAGATTTCTTAGTGCACCAACATGA
Protein Sequence: MDLTTRLDVEEDGAHSQSPNPNSSSDNHRVVSTERCPSSSAVHESSAVDASSSKGEGEPIIKEEMVITVDPYFGNDPEADSGTEDNCRSDENITSDNEMIKDQSKNDLVRKNNGGKKSFACSVCDYKTNNFRDLEIHSNSHSGEKEYACAFCDYKTKKSYDLRKHTMTHTGEKPYACDHCGYRSIYFNNLKIHIRTHTGEKPYACKLCNYRAIQSTKLKTHMVTHTGEKPFACTMCDYKTNHSRDLKSHINTHTGEKPYACDKCEYRAVQPQSLKTHMATHSDEKPFTCNLCDYRAGQVKNLRRHMIIHTGLKPYACDVCDYKATHLVSLKRHKKTHTGEKPHACNVCDHRTAQSSQLKLHMMTHSGEKPFACDTCDYRAVHLITLRRHMQTHTGVKPYACDICDYRAVQLHTLKAHMATHTDDKPYTCDMCEYRARKSHDLKKHKMTHTGERPFACDLCDYRAIHLKNLKRHILTHTGEKPYACDICDFRAVYPLTLKRHRMNHTDEKPYSCDICDYRAVQLINLQRHIMTHTGEKPFACTICDYRAVQQQSLKAHMSTHTGEKPYACTICDYRAAQQKSLKAHMKTHSAEKPTSSRFLSAPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00930601;
90% Identity: iTF_00930601;
80% Identity: iTF_00930601;