Basic Information

Insect: Lygus lineolaris
Gene Symbol: -
Assembly: GCA_030264115.1
Location: JAEMON010000012.1:12565700-12567514[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.011 1 10.7 0.6 1 23 119 141 119 141 0.96

2 17 0.00045 0.044 15.0 2.2 1 23 147 169 147 169 0.98

3 17 8e-05 0.0078 17.4 1.8 1 23 175 197 175 197 0.98

4 17 0.0016 0.16 13.3 0.8 1 23 203 225 203 225 0.97

5 17 0.0002 0.019 16.2 2.9 1 23 231 253 231 253 0.97

6 17 0.00057 0.056 14.7 0.2 1 23 259 281 259 281 0.98

7 17 0.00037 0.036 15.3 0.3 1 23 287 309 287 309 0.98

8 17 0.00072 0.071 14.4 1.8 1 23 315 337 315 337 0.98

9 17 6.5e-05 0.0063 17.7 2.9 1 23 343 365 343 365 0.96

10 17 0.00077 0.075 14.3 1.2 1 23 371 393 371 393 0.97

11 17 0.00019 0.018 16.2 0.3 1 23 399 421 399 421 0.98

12 17 0.0022 0.21 12.9 3.9 1 23 427 449 427 449 0.99

13 17 0.00026 0.025 15.8 1.0 1 23 455 477 455 477 0.97

14 17 0.013 1.2 10.5 0.2 1 23 483 505 483 505 0.97

15 17 3.7e-05 0.0036 18.5 0.1 1 23 511 533 511 533 0.99

16 17 6.3e-05 0.0061 17.7 0.2 1 23 539 561 539 561 0.97

17 17 1e-05 0.00099 20.2 0.4 1 23 567 589 567 589 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.011	1	10.7	0.6	1	23	119	141	119	141	0.96
2	17	0.00045	0.044	15.0	2.2	1	23	147	169	147	169	0.98
3	17	8e-05	0.0078	17.4	1.8	1	23	175	197	175	197	0.98
4	17	0.0016	0.16	13.3	0.8	1	23	203	225	203	225	0.97
5	17	0.0002	0.019	16.2	2.9	1	23	231	253	231	253	0.97
6	17	0.00057	0.056	14.7	0.2	1	23	259	281	259	281	0.98
7	17	0.00037	0.036	15.3	0.3	1	23	287	309	287	309	0.98
8	17	0.00072	0.071	14.4	1.8	1	23	315	337	315	337	0.98
9	17	6.5e-05	0.0063	17.7	2.9	1	23	343	365	343	365	0.96
10	17	0.00077	0.075	14.3	1.2	1	23	371	393	371	393	0.97
11	17	0.00019	0.018	16.2	0.3	1	23	399	421	399	421	0.98
12	17	0.0022	0.21	12.9	3.9	1	23	427	449	427	449	0.99
13	17	0.00026	0.025	15.8	1.0	1	23	455	477	455	477	0.97
14	17	0.013	1.2	10.5	0.2	1	23	483	505	483	505	0.97
15	17	3.7e-05	0.0036	18.5	0.1	1	23	511	533	511	533	0.99
16	17	6.3e-05	0.0061	17.7	0.2	1	23	539	561	539	561	0.97
17	17	1e-05	0.00099	20.2	0.4	1	23	567	589	567	589	0.98

Sequence Information

Coding Sequence: ATGGATTTGACGACACGATTGGATGTGGAGGAGGATGGAGCACATTCGCAATCACCAAATCCAAACAGCTCCTCTGATAATCACAGAGTCGTTTCAACAGAACGATGTCCATCGAGCAGCGCTGTCCATGAATCTTCTGCAGTTGATGCCAGTAGTTCCAAGGGTGAAGGTGAGCCAATCATCAAGGAGGAAATGGTCATCACGGTGGATCCATACTTTGGTAATGATCCAGAGGCAGACAGTGGAACGGAAGATAATTGTAGGTCTGATGAGAACATCACATCTGACAATGAGATGATCAAGGATCAGTCCAAGAATGATCTAGTCAGGAAGAACAATGGAGGTAAAAAATCCTTTGCCTGTTCAGTTTGTGATTACAAAACCAATAATTTCCGTGATTTGGAGATACATTCGAATTCTCACTCAGGTGAGAAGGAGTATGCTTGTGCCTTTTGTGActataaaacgaaaaaatcctATGATTTGAGGAAACACACAATGACTCATACAGGTGAGAAACCCTATGCTTGCGATCATTGTGGCTACCGatctatttatttcaataatttgaagaTCCACATTAGAACTCACAcaggcgagaagccctatgcctgtaaaCTTTGTAATTATAGGGCTATACAAAGCACCAAATTGAAGACACACATGGTGACTCATACAGGTGAAAAGCCCTTTGCTTGTACTATGTGTGATTACAAAACCAATCATTCCCGTGACTTGAAAAGCCATATAAATACTCACACAGGAGAGAAGCCGTATGCATGTGATAAGTGCGAGTACAGAGCTGTTCAACCACAAAGCTTAAAGACGCACATGGCTACTCACTCAGATGAAAAGCCCTTTACCTGTAATCTTTGTGACTATCGAGCTGGGCAAGTGAAAAATTTGAGGCGTCACATGATAATTCATACTGGTCTGAAACCCTATGCTTGTGATGTTTGTGACTACAAAGCTACTCACCTCGTTAGTTTGAAGAGGCACAAAAAGACCCACACAGGCGAAAAGCCTCATGCTTGTAACGTTTGTGACCACAGAACCGCACAAAGCAGTCAATTGAAGTTACACATGATGACGCACTCTGGCGAGAAACCGTTTGCCTGCGATACTTGCGATTACAGAGCAGTTCACCTCATTACTCTTAGGAGACACATGCAGACGCACACAGGCGTGAAGCCCTACGCCTGCGACATTTGCGATTACCGAGCAGTACAACTTCACACCTTGAAGGCGCACATGGCAACTCACACGGACGATAAGCCCTATACTTGCGATATGTGTGAATACAGAGCGAGGAAATCCCACGATTTGAAGAAACACAAGATGACGCATACGGGTGAGAGACCCTTCGCGTGTGACTTATGCGATTACAGAGCCATCCATCTTAAGAATTTGAAGAGGCACATTTTGACTCATACAGGCGAAAAGCCCTATGCGTGTGACATCTGTGATTTCAGAGCTGTTTATCCTCTAACTTTGAAGAGGCACAGGATGAACCACACAGACGAGAAGCCGTACTCTTGTGACATTTGCGATTATCGAGCTGTTCAACTCATTAATTTGCAGAGACACATCATGACTCACACAGGCGAGAAGCCCTTCGCCTGCACAATATGTGACTATAGAGCCGTTCAACAACAAAGTTTAAAGGCGCACATGTCAACTCATACAGGAGAAAAGCCTTATGCCTGTACGATTTGTGACTACAGAGCTGCACAGCAGAAAAGTTTGAAGGCACACATGAAAACTCACTCTGCTGAAAAGCCCACTTCCTCCAGATTTCTTAGTGCACCAACATGA
Protein Sequence: MDLTTRLDVEEDGAHSQSPNPNSSSDNHRVVSTERCPSSSAVHESSAVDASSSKGEGEPIIKEEMVITVDPYFGNDPEADSGTEDNCRSDENITSDNEMIKDQSKNDLVRKNNGGKKSFACSVCDYKTNNFRDLEIHSNSHSGEKEYACAFCDYKTKKSYDLRKHTMTHTGEKPYACDHCGYRSIYFNNLKIHIRTHTGEKPYACKLCNYRAIQSTKLKTHMVTHTGEKPFACTMCDYKTNHSRDLKSHINTHTGEKPYACDKCEYRAVQPQSLKTHMATHSDEKPFTCNLCDYRAGQVKNLRRHMIIHTGLKPYACDVCDYKATHLVSLKRHKKTHTGEKPHACNVCDHRTAQSSQLKLHMMTHSGEKPFACDTCDYRAVHLITLRRHMQTHTGVKPYACDICDYRAVQLHTLKAHMATHTDDKPYTCDMCEYRARKSHDLKKHKMTHTGERPFACDLCDYRAIHLKNLKRHILTHTGEKPYACDICDFRAVYPLTLKRHRMNHTDEKPYSCDICDYRAVQLINLQRHIMTHTGEKPFACTICDYRAVQQQSLKAHMSTHTGEKPYACTICDYRAAQQKSLKAHMKTHSAEKPTSSRFLSAPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00930901;
90% Identity: iTF_00930901;
80% Identity: iTF_00930901;