Llin014848.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- -
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000006.1:11283968-11306161[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6e-06 0.00025 22.1 1.5 1 23 108 130 108 130 0.98 2 13 0.00011 0.011 16.9 0.7 1 23 136 158 136 158 0.96 3 13 0.00058 0.057 14.7 0.1 1 23 252 274 252 274 0.98 4 13 0.044 4.2 8.8 0.9 1 23 280 303 280 303 0.96 5 13 0.81 79 4.8 0.1 2 23 334 355 333 355 0.93 6 13 0.023 2.2 9.6 1.1 1 23 362 385 362 385 0.95 7 13 0.0074 0.72 11.2 1.7 2 23 389 410 388 410 0.97 8 13 6.7e-05 0.0066 17.6 0.4 2 23 424 445 423 445 0.95 9 13 3.8e-06 0.00037 21.6 0.4 1 23 488 510 488 510 0.98 10 13 0.003 0.29 12.4 0.2 3 23 518 538 516 538 0.97 11 13 6.5e-05 0.0064 17.7 0.3 1 23 544 566 544 567 0.96 12 13 0.01 0.97 10.8 0.2 1 23 579 601 579 601 0.95 13 13 0.015 1.4 10.3 0.3 3 23 939 959 937 959 0.96
Sequence Information
- Coding Sequence
- ATGGCCGACACCATAGTGTCAACAGGTTCGGAAGATAACTATGGGTTCAATTTGGAATGGATTGCTGAAGGATCGGGAATCGGCGAAGAGATCTGTGGTGTCGACAAAGACTGCATTGTCGTCCCGACATCGCCTATCAtcccaaaaatcgaaaactgtGATACTGATTATGTCGAAATCCAGGTCACCGAAGAAGAAGTCATTGCTGCACAATGGGATGATAATACAGACGGggTTGGAGAACTTGAAGTTGGAGGGCTCACTCAAGACGTGCTAGTTCCACTCGACGAAGAGCAAGATGAATATTCAAGGTTGCATCCTTATCCTTGTGATTTTTGCAGTAGAAGGTTTTCAAAACAATCTACTCTTACGGTTCACATGCTTACTCATCAAACGCAAAGACTCCACGATTGTAATATGTGCGGTGCAACATATCGACGCAAACTAGAACTGGTGGAACACATGAAAATCCACTCTTACGCTCCTATCAAAACCGAAGAAGAAGATTTCGAGAGCATGTGCGTCCTCGATGAACCTAGCATCGTCGTCAAATCGCCCAAAAAACCGGCGCGGGctagaaaaaagaagaagaagaacaacacgTTGAAACAAGGGTCGTACACTATAGAAACCAGCGATATGAGTTTTATGGAGTCATTCAACCATGAAATCAAGCAAGAATACTTGGAAGAACCTATTGCGGCTCCATACGTAGACGATCAGAAGTTCCCCATCATCGACCCCGCTCGCCCTTACGTCTGTCAGTTCTGCGGTATCGGGTTTGCTCGAGAGAAGGCTTTGATATCCCACAAGCTTGTCCACGCAGCCGACTCAGCTTTCGAGTGCGATCGGTGCAGCGACGTCTTCCAAACAGCGCACAAGCTCGAGCAACACATCGCCTCCAGGCACGGCCCGAAGTCCCAATCTAGAAAGTCGTCAAGTAGTTTGAATTCCAGAAAGGTCCCTAAAGAAGCGACTATTCCCGAAATGGAGGGCATCGTGTGCGAGTTGTGTTCCCTCGTTTTGGACACAGTCGACGAATTATTGCGGCATAAAGAGTTTCACGATGTCACTACCGGGATACACACGTGCAACTACTGCCATTCTGATTACGTTGACGTGGAAGACTTAAAAGTGCATCTAAACGGCGACCATTCGTCCATGAAATGCAATCGCTGCTCGTTATTGTTCAAAGATCGATATTTGCTGTCAAACCACTATCTCACCCACAGTACCGAAACGAACGTGAATCCTTTGAAACCTGAATTGGTCTGCAATGTTTGTTCCCGAAAGTTTTCCACAAAAGTCGCattgaaaagACACGGGTCCGTTCACGCAGAATCGAAAGACAAGAGCACCACCAACATCCTCTGCGTTGAATGTGGATCCGCGGACTTTGCGGATGGTCGCTCTCTGTTGTACCACAGGCAAGTTGAGCACGGCGTCAACATGTCCCGGCTGTTTCCTTGCTTGGAATGTGGCAAGACCTTCAATTCCCGCTCTTCTCAGCAAATCCATATTCGGATCCATACTGGCGAGCGGCCGTACGGGTGTCGGTATTGCTGGAAAGCGTTCGGCGACGGCGGCACGCTGAGGAAGCATGAGCGGATTCACACCGGAGAAAAACCTTACGTTTGCCCCGTCTGTTCCAAGGCTTTCAATCAGAGAGTCGTGTTGAGGGAACACGTCAGAGCTCACCATTCCGGCACTGAAGGCAAGCTATCCGATTCGTGTTACGAATGTATGGTGTGCGGCCAGTTCTTCGGCGCGTCAGAGGAACTCTGCGCTCATTTAGTTCAACATTCCGACGAAAATACGGCTAAACACCGGACGCCCACAGTTAGAAAAACTAATATTACCCGAAGGAAAAAACCTCCAAGTTCGAAAGTCACCTCGGATGTACCGATAGAGATTCCGTCTCCTCCCAAGATCGAATATAAACCACCAGTTGTTAGTCCTCCGCCGAAAAAGAAATCTACCAAAAGTCGTCCAGATAATTTGGACGCAATTATGAAATTAGGAAAATCGACTTTAGAAAACTTAGCTTCCATGTCTGATGGAAAACGTGCTCGTATAGTGAGATCTGGGAAAAAAGGCTTCAGCAAAGGGCAAAACAAACGATACCTGAATAAAAAAGAGAAGGGGAAAACGAGTAAACTGCTCACCAATGGAAGTTACGCTTCTAAGTATGCCGTGAGCCACTCTGGGTTGGCAGGAATCACAGTTCCTGGTTTAGGAGGAATCACTGTTCCTGCGATGGGAGGAATCACTGTTCCTGCTATGGGAGGTATCACTGTTCCTGCACCAGAGACTGTAGAGAGGATCGAAGAAGAAATCAAAGAAGAAACAGATTTTATGTTAGGGTTCGAAGGGATGAGTAATGGTGACGGTGAATCGAGCATGAGGACTCGTCCGAGAACGAAAAACGTGTCTTATCACAATATGAAGATCGACCACAAGACGTACAACCTAGCAACTTTCCAAGACATGGATTTCGACGTGCCTTTAGAGTCTGAACTGACGGACACTCAATTCCTTTTGCCTCCGGTccctaaaaagaagaaaagttgcaaaaagaagaaaaaatcgtcGAAGAGACTCGAAGAGCCGTCAGATAGCAGCAGCGGCGAATGCCAGTACATCAACGGCATCACGTTGGAACCACCATCGAACGTGGTCAGCTGTAGTGGAGAGTGCGAGTACATCAATGGAATCACAATTGATCCGATGCCTCTCCCCGAACAAGAAGAACAGATAGAAACCACGATAGTCGACAGCGACGACCTAGAAATCAAGCAAGACGGTACGATAGCTTGTCAAATCTGCAGTGAAATCTTTCTCACTTCCGACGAACTTCTTAAACACATACATTCTCATTTTTAA
- Protein Sequence
- MADTIVSTGSEDNYGFNLEWIAEGSGIGEEICGVDKDCIVVPTSPIIPKIENCDTDYVEIQVTEEEVIAAQWDDNTDGVGELEVGGLTQDVLVPLDEEQDEYSRLHPYPCDFCSRRFSKQSTLTVHMLTHQTQRLHDCNMCGATYRRKLELVEHMKIHSYAPIKTEEEDFESMCVLDEPSIVVKSPKKPARARKKKKKNNTLKQGSYTIETSDMSFMESFNHEIKQEYLEEPIAAPYVDDQKFPIIDPARPYVCQFCGIGFAREKALISHKLVHAADSAFECDRCSDVFQTAHKLEQHIASRHGPKSQSRKSSSSLNSRKVPKEATIPEMEGIVCELCSLVLDTVDELLRHKEFHDVTTGIHTCNYCHSDYVDVEDLKVHLNGDHSSMKCNRCSLLFKDRYLLSNHYLTHSTETNVNPLKPELVCNVCSRKFSTKVALKRHGSVHAESKDKSTTNILCVECGSADFADGRSLLYHRQVEHGVNMSRLFPCLECGKTFNSRSSQQIHIRIHTGERPYGCRYCWKAFGDGGTLRKHERIHTGEKPYVCPVCSKAFNQRVVLREHVRAHHSGTEGKLSDSCYECMVCGQFFGASEELCAHLVQHSDENTAKHRTPTVRKTNITRRKKPPSSKVTSDVPIEIPSPPKIEYKPPVVSPPPKKKSTKSRPDNLDAIMKLGKSTLENLASMSDGKRARIVRSGKKGFSKGQNKRYLNKKEKGKTSKLLTNGSYASKYAVSHSGLAGITVPGLGGITVPAMGGITVPAMGGITVPAPETVERIEEEIKEETDFMLGFEGMSNGDGESSMRTRPRTKNVSYHNMKIDHKTYNLATFQDMDFDVPLESELTDTQFLLPPVPKKKKSCKKKKKSSKRLEEPSDSSSGECQYINGITLEPPSNVVSCSGECEYINGITIDPMPLPEQEEQIETTIVDSDDLEIKQDGTIACQICSEIFLTSDELLKHIHSHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00145858; iTF_01365788; iTF_00386610; iTF_00884498;
- 90% Identity
- -
- 80% Identity
- -