Scal030036.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- -
- Assembly
- GCA_963920205.1
- Location
- OY986058.1:21742700-21747813[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4e-06 0.00023 22.7 1.4 1 23 109 131 109 131 0.98 2 13 0.00016 0.027 16.1 0.6 1 23 137 159 137 159 0.96 3 13 0.00016 0.027 16.1 0.1 1 23 252 274 252 274 0.98 4 13 0.0005 0.084 14.6 0.3 1 23 280 303 280 303 0.97 5 13 1.7 2.8e+02 3.5 0.0 3 23 335 355 333 355 0.92 6 13 0.3 50 5.9 1.2 1 23 362 385 362 385 0.91 7 13 0.072 12 7.8 2.2 2 23 389 410 388 410 0.97 8 13 3.8e-05 0.0064 18.1 0.7 2 23 422 443 421 443 0.96 9 13 3e-06 0.0005 21.6 0.4 1 23 486 508 486 508 0.98 10 13 0.0024 0.4 12.5 0.2 3 23 516 536 514 536 0.97 11 13 5.2e-05 0.0086 17.7 0.3 1 23 542 564 542 565 0.96 12 13 0.00026 0.044 15.5 0.4 1 23 577 599 577 599 0.95 13 13 0.0026 0.43 12.3 0.6 3 23 916 936 914 936 0.96
Sequence Information
- Coding Sequence
- ATGGCTGACACCATAGTGTCTACAGGTTCGGAAGACAACTACGGCGGCTTCCATTTAGAATGGATAGCGGAAGGATCTGGGATCGGGGAGGAGATCTGCGGCGTCGACAAAGACAGCATAGTAGTCCCTTCGTCGCCAATTATacctaaaattgaaaactgtGATACTGATTACGTTGAAATTCAGGTTACAGAAGAGGAAGTTATAGCTGCCCCATGGGACGACAATACAGACGGAGTTGGCGAACTTGAAGTTGGAGATCTAAGTCAAGATGTGTTGGTCCCACTTGATGAAGAGCAAGATGAATATTCCCGTTTACACCCTTACCCTTGTGATTTTTGCAGCCGTCGGTTTTCCAAACAATCGTCCCTGACGGTGCACATGCTTACCCATCAAACACAGAGGCTCCACGATTGCAACATGTGTGGTGCTACATACAATCGTAAACTAGAGCTAGTGGAACACATGAAAATCCACTCTTACGCTCCTGTGAAGCACGAAGAGGACATCGAAGATATATGTGTTCTGGATGAACCCAACATTGTTATCAAACCCCCTAAAAAACCGGCACGGGccaggaaaaagaagaaaaagaacaacACGCTTAAACACACTTACATTTTTGAACCGAATGAGATGCCTTTTATGGAGGAGTCTTTCAACACTGAAATAAAGCAAGAATACATGGAAGAACCTATTGATGACCCATTCGGAGAGGTTCAGAAATTTCCCGTCATAGACCCAGCTCGTCCTTACGTCTGTCAATACTGTGGAATCGGATTCGCCCGGGAGAAAGCGCTGTTATCCCACAAACTCGTTCATGTCGGAGACTCCGCTTTCGAATGCGACCGTTGCAACGAAATCTTCCAGTCGGCGGCCAAATTGGAGCAGCACATGTCGTCCAGACACGGTACCAAGGGCAACGCAAAGAAGTCTTCTAGTAGTGCGAGTTCCAGGAAGGCCATTAAAGAAGACACGATACCCGAATCGGAAGGTGTTATATGCGAGTTGTGTTCCCTCGTTTTAGACACAGTAGAAGAACTAGTGAGGCACAAGGAGTTCCATGATGTGACCACAGGAATACACACCTGCAACTTCTGCCACTCAGACTACGTAGATATGAATGACTTGAAAGTTCATCTCGATGGCGCTCATTCCTCCATGAAATGCAATCGCTGCTCGTTGCTGTTCAAAGATCGTTTTTCCCTGTCAAATCACAATCTTACACATTCTGACACGAGAGTGGCCCCCAAACCTGATCTGGTCTGCAACGTTTGTTCACGGAAATTTTCTTCAAAGGTTGCACTAAAAAGGCATGCATACACTCACGCGGATGCAAAAGACAAAAGCACCACAAGCATTCTTTGTGTCGAGTGCGGATCGAGCGATTTTGTGGACGGGCGGTCGCTTCTGTATCACCGGCAGGTCGAGCACGGCGTGAACATGTCTCGCCTGTTCCCCTGCTTAGAGTGCGGCAAAACCTTCAATTCCCGTTCCTCCCAGCAAATCCATATCCGCATCCACACCGGCGAGCGGCCCTACGGATGTCGGTATTGTTGGAAGGCATTCGGAGACGGCGGTACGCTTAGGAAGCACGAAAGGATCCACACGGGAGAAAAACCGTACGTGTGTCCTGTCTGTTCCAAGGCATTCAATCAAAGAGTGGTGCTGCGGGAACACGTCAGAGCTCATCACTCCGGCACAGAAGGGAAACTATCAGACTCTTGTTACGAATGTATGGTGTGTGGCCAGTTCTTTGGAACCTCCGACGAACTCTGCGCTCATTTAGTTCAACACTCTGACGAAAATACCGCCAAACACCGGACGCCTACGGTCAGAAAGACGAACATTACCAGGCGGAGAAAACCGCCAAGTTCGAAAATCGCTTTAGATGAGTCTCTAATCCATATCCCACCCCCTCCTAAGATCGAATACAAACCACCGGTAATTAATCCTCCGCCAAAAAAGAAATCAACCAAAAGTTCCCGTCCAGACAATCTCGACGCAATAGTGAAACTAGGAAAATCTACTTTAGAAAATTTAGCTTCCATGTCAGATGGAAAACGAGCTCGTATCGTGAGATCTGGTAAAAAAGGTTTCAGCAAGGGCCAAAATAAACGTTACCTGAATAAAAAAGAGAAGGGGAAAACAGGTAAACTCCTTACAAATGGGAGTTACGCTTCGAAATACGCAGTCAGTCATGCTGGTGTAGGAGGGATTACTGTGCCGGCTCCGGAGACTCTGGAGAGAATCCCAGAAGACATCAAAGAAGATACAGATTACATGTTAGGGTTGGAGGGAATGTCTAACGGCGACGGTGAATCTAGCATGAGAACGCGTCCGAGGACGAAGAACGTGTCGTACCACAACATGAAGATCGACCACACGAGTTATAACCTTGCGACTTTTCAAGACATGGATTTCGAATTGCCCATTGATTCTGTGCTATCGGATAGTCAGTTTCTCATCCCTCCTGCcccaaagaagaagaagagctgcaaaaagaagaaaaagtcgTCCAAATCGAAGGCCGTCGAGGAGCACGCGGATAGCAGTAGTGGCGAATGCCAATACATCAACGGAATCACGTTAGAACCTCCATCAAATATCATCAGTAGTAGCGGGGATTGCGATTACATCAACGGTATCACAATAGACCCAATGCCTCTCCCTGAACAAGAAGAACAGATTGAAACGACTATAGTCAGTGACGACTTGGAAATCAAAGAAGATGGGACGATAGCTTGTCAAATCTGTAGCAAAATCTTCCTCACTTCAGATGAACTCCTCAAACACATACATTCTCATTTTTAA
- Protein Sequence
- MADTIVSTGSEDNYGGFHLEWIAEGSGIGEEICGVDKDSIVVPSSPIIPKIENCDTDYVEIQVTEEEVIAAPWDDNTDGVGELEVGDLSQDVLVPLDEEQDEYSRLHPYPCDFCSRRFSKQSSLTVHMLTHQTQRLHDCNMCGATYNRKLELVEHMKIHSYAPVKHEEDIEDICVLDEPNIVIKPPKKPARARKKKKKNNTLKHTYIFEPNEMPFMEESFNTEIKQEYMEEPIDDPFGEVQKFPVIDPARPYVCQYCGIGFAREKALLSHKLVHVGDSAFECDRCNEIFQSAAKLEQHMSSRHGTKGNAKKSSSSASSRKAIKEDTIPESEGVICELCSLVLDTVEELVRHKEFHDVTTGIHTCNFCHSDYVDMNDLKVHLDGAHSSMKCNRCSLLFKDRFSLSNHNLTHSDTRVAPKPDLVCNVCSRKFSSKVALKRHAYTHADAKDKSTTSILCVECGSSDFVDGRSLLYHRQVEHGVNMSRLFPCLECGKTFNSRSSQQIHIRIHTGERPYGCRYCWKAFGDGGTLRKHERIHTGEKPYVCPVCSKAFNQRVVLREHVRAHHSGTEGKLSDSCYECMVCGQFFGTSDELCAHLVQHSDENTAKHRTPTVRKTNITRRRKPPSSKIALDESLIHIPPPPKIEYKPPVINPPPKKKSTKSSRPDNLDAIVKLGKSTLENLASMSDGKRARIVRSGKKGFSKGQNKRYLNKKEKGKTGKLLTNGSYASKYAVSHAGVGGITVPAPETLERIPEDIKEDTDYMLGLEGMSNGDGESSMRTRPRTKNVSYHNMKIDHTSYNLATFQDMDFELPIDSVLSDSQFLIPPAPKKKKSCKKKKKSSKSKAVEEHADSSSGECQYINGITLEPPSNIISSSGDCDYINGITIDPMPLPEQEEQIETTIVSDDLEIKEDGTIACQICSKIFLTSDELLKHIHSHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00930628;
- 90% Identity
- -
- 80% Identity
- -