Ldol059394.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940983.1:33554245-33569531[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3e-06 0.00042 22.7 1.4 1 23 108 130 108 130 0.98 2 13 2.3e-05 0.0073 18.8 0.7 1 23 136 158 136 158 0.96 3 13 0.00016 0.05 16.1 0.1 1 23 251 273 251 273 0.98 4 13 0.0005 0.16 14.6 0.3 1 23 279 302 279 302 0.97 5 13 2.6 8.3e+02 2.9 0.1 3 23 333 353 332 353 0.94 6 13 0.06 19 8.0 1.1 1 23 360 383 360 383 0.91 7 13 0.0077 2.4 10.8 1.7 2 23 387 408 386 408 0.97 8 13 3.7e-05 0.012 18.1 0.7 2 23 420 441 419 441 0.96 9 13 2.9e-06 0.00092 21.6 0.4 1 23 484 506 484 506 0.98 10 13 0.0023 0.73 12.5 0.2 3 23 514 534 512 534 0.97 11 13 5e-05 0.016 17.7 0.3 1 23 540 562 540 563 0.96 12 13 0.00026 0.082 15.5 0.4 1 23 575 597 575 597 0.95 13 13 0.0031 0.98 12.1 1.3 3 23 915 935 913 935 0.97
Sequence Information
- Coding Sequence
- ATGGCTGACACCATTGTGTCGACAGGATCGGAAGACAACTACGGTTTCAATTTGGAATGGATCGCCGAAGGATCTGGGATGGGGGAGGAAATATGCGGTGTCGACAAAGACTGCATAGTTGTACCGACATCGCCAATAATGCCCAAAATGGAAAACAGCGATACAGATTACGTCGAAATCCAAGTTACAGAAGAGGAAGTAATAGCAGCACCTTGGGATGACAACACAGACGGCGTTGGCGAACTTGAAGTTGGTGGTTTGTCTCAAGATGTGCTGGTCCCACTTGATGAAGAACAGGATGAATATTCCCGATTGCATCCGTACCCTTGTGATTTTTGCAGCCGGCGGTTTTCGAAACAATCGTCCCTGACGGTCCACATGCTCACCCATCAAACGCAGAGGCTCCACGATTGCAACATGTGCGGTGAAACCTACAGCCGCAAGCTGGAGCTGGTCGAACAtatgaaaattcactcttacGCTCCCGTGAAGACTGAAGAAGACTTCGAAGGAATTTGTGTTCTGGATGAACCCCGTATTGTTGTTAAACCACCAAAAAAACCGGCGCGCGCccggaaaaagaagaagaagaacaataCTCTAAAACAAACATATATTTTTGAACCCAGTGATATGAATTTTATAGAGGAATCCTTCACAAATGAAATCAAGGGAGAGTACCTGGAAGACCCGATTCCGGACTCCTTTGAAGAAACTGCCAAGTTCCCTGTCATAGATCCCGCTCGTCCTTATGTCTGTCAGTACTGCGGTATCGGATTCGCCCGAGAGAAGGCGTTATTATCGCATAAGCTCGTTCATGTTGGAGACTCTGCTTTTGAATGTGACCGCTGCAATGAAATTTTCCAATCTGCGGCCAAGTTGGAGCAACACATGTCATCCAAACATGGTGCTAAGGGTCACTCAAAGAAGTCGAGTAGTTCGAACAGGAAGGTCTCTAAAGAAGAAACTATAGCTGAACCAGATGGCGTTATTTTATGCGAGCTGTGTTCCATCGTTTTAGACACAATAGAAGAACTAGTGAGACATAAGGAGTTCCATGATGCGACTACTGGAATACACACTTGCAACTACTGCCACTCAGACTACGTCGACATGAATGACCTGAAAGTGCATCTTGACGGTGCCCATTCCTCTATGAAATGCAATCTTTGCTCTTTGCTGTTCAAAGATCGATTTTCCCTGTCAAACCATACTCTTACTCATTCTGACACGAGGATACCTCCCAAAGCCAACCTGGTCTGCAACGTTTGCTCCCGAAAGTTTTCCTCGAAGGTTGCTCTGAAGAGACATGCGTACACTCATGCCGATGCTAAAGACAAAAGCACCACAAGCATCCTTTGCGTCGAGTGTGGATCAAGCGATTTTGTGGACGGGCGGTCTCTCCTGTACCACAGGCAGGTCGAGCACGGAGTGAACATGTCCCGCCTGTTTCCCTGTCTCGAATGCGGTAAGACCTTCAACTCCCGATCCTCCCAGCAAATCCACATCCGCATCCACACTGGGGAGCGGCCGTACGGTTGTCGGTATTGTTGGAAGGCGTTCGGCGACGGGGGTACGCTCAGGAAGCACGAACGGATCCACACGGGAGAGAAACCCTATGTCTGTCCCGTCTGTTCCAAAGCGTTCAATCAAAGGGTCGTGTTACGGGAACACGTCAGAGCTCATCACTCCGGCACAGAAGGGAAGCTGTCGGATTCTTGTTACGAATGTATGGTGTGCGGCCAGTTCTTTGGGACCTCCGATGAGCTTTGCGCTCATTTAGTTCAACATTCCGACGAAAACACCGCCAAACACCGGACGCCTACGGTTAGAAAGACGAATATTACCAGGCGAAAAAAATCATCCACGTGTGTGAAATTACCTTTGGACGAGCCTCCGCTAGAGAGCCCATCCCCTCCCAAGATGGTGTACAAACCGCAGGTGGTTAGTCATCCACCGAAAAAGAAATCAAACAAAAGTTCCCGTCCAGACAATTTGGACACAATAGTAAAACTAGGAAAATCTACTTTAGAAAATTTAGCTTCCATGTCAGATGGAAAACGTGCACGTATTGTGAGATCTGGTAAAAAAGGTTTCAGCAAGGGCCAAAACAAACGTTACCTGAATAAGAAAGAGAAGGGGAAAACTAGTAAATTGCTTACCAATGGGAGTTACGCTTCCAAGTACGCTGTGAGCCACTCTGGGGTTGGAGGGATAACTGTGCCAGCTCCGGAGACAGTGGAGACAATCCAAGAAGAAATCAAAGAAGAAACTGATTACATGTTGGGTTTAGAGGGAATGTCCAACGGTGACGGTGAATGTAATATGAGGACTCGTCCTAGGACGAAAAACGTGTCTTACCACAACATGAAGGTCGACCACAAAAGTTACAACTTGGCGACGTTCCAAGACATGGACTTCGCACTGCCCATGGAACCCGAGCTGTCTGACAGCCAGTTCCTCCTGCCCCCGGctccgaagaagaagaagagctgcaagaagaaaaagaaatcgTCCAAGGCGAAGGCAATCGAGGAGACGGTGGACGGCAGCAGCAGCGAATGCCAGTACATTAACGGAATCACATTAGAACCTCCTTCGAACATCATCAACAGCAGCGGAGAGTGCGAGTATATCAACGGGATCACTATAGACCCGCTGCCACTCCCCGAACAAGAGGAGCAGATCGAAACGACGATAGTTAGTGACGACTTGGAAATCAAAGAAGACGGAGCGACGGCATGTCAAATCTGCAGCAAGATCTTCCTCACTTCCGATGAACTTTTCAAACACATACATTCTCATTTTTAA
- Protein Sequence
- MADTIVSTGSEDNYGFNLEWIAEGSGMGEEICGVDKDCIVVPTSPIMPKMENSDTDYVEIQVTEEEVIAAPWDDNTDGVGELEVGGLSQDVLVPLDEEQDEYSRLHPYPCDFCSRRFSKQSSLTVHMLTHQTQRLHDCNMCGETYSRKLELVEHMKIHSYAPVKTEEDFEGICVLDEPRIVVKPPKKPARARKKKKKNNTLKQTYIFEPSDMNFIEESFTNEIKGEYLEDPIPDSFEETAKFPVIDPARPYVCQYCGIGFAREKALLSHKLVHVGDSAFECDRCNEIFQSAAKLEQHMSSKHGAKGHSKKSSSSNRKVSKEETIAEPDGVILCELCSIVLDTIEELVRHKEFHDATTGIHTCNYCHSDYVDMNDLKVHLDGAHSSMKCNLCSLLFKDRFSLSNHTLTHSDTRIPPKANLVCNVCSRKFSSKVALKRHAYTHADAKDKSTTSILCVECGSSDFVDGRSLLYHRQVEHGVNMSRLFPCLECGKTFNSRSSQQIHIRIHTGERPYGCRYCWKAFGDGGTLRKHERIHTGEKPYVCPVCSKAFNQRVVLREHVRAHHSGTEGKLSDSCYECMVCGQFFGTSDELCAHLVQHSDENTAKHRTPTVRKTNITRRKKSSTCVKLPLDEPPLESPSPPKMVYKPQVVSHPPKKKSNKSSRPDNLDTIVKLGKSTLENLASMSDGKRARIVRSGKKGFSKGQNKRYLNKKEKGKTSKLLTNGSYASKYAVSHSGVGGITVPAPETVETIQEEIKEETDYMLGLEGMSNGDGECNMRTRPRTKNVSYHNMKVDHKSYNLATFQDMDFALPMEPELSDSQFLLPPAPKKKKSCKKKKKSSKAKAIEETVDGSSSECQYINGITLEPPSNIINSSGECEYINGITIDPLPLPEQEEQIETTIVSDDLEIKEDGATACQICSKIFLTSDELFKHIHSHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00930628;
- 90% Identity
- -
- 80% Identity
- -