Basic Information

Insect: Lydus trimaculatus
Gene Symbol: -
Assembly: GCA_037414755.1
Location: JAZBGY010002263.1:4367-6193[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.065 1.5e+02 2.2 0.0 24 47 74 97 63 102 0.84

2 15 0.13 3e+02 1.3 0.0 23 51 101 129 96 130 0.81

3 15 0.033 79 3.2 0.1 21 48 127 154 125 159 0.84

4 15 0.22 5.3e+02 0.5 0.1 21 51 155 185 151 187 0.82

5 15 0.25 5.9e+02 0.4 0.1 21 43 183 205 175 208 0.82

6 15 0.0055 13 5.7 0.1 20 50 210 240 200 243 0.82

7 15 0.0023 5.6 6.9 0.1 22 52 268 298 261 300 0.85

8 15 0.1 2.4e+02 1.6 0.0 23 48 297 322 294 327 0.84

9 15 0.043 1e+02 2.8 0.0 21 46 323 348 319 355 0.83

10 15 0.59 1.4e+03 -0.8 0.0 21 44 351 374 346 378 0.84

11 15 0.00017 0.41 10.5 0.0 18 52 425 459 419 461 0.88

12 15 0.26 6.2e+02 0.3 0.0 21 47 484 510 478 516 0.79

13 15 0.06 1.4e+02 2.4 0.1 21 45 512 536 499 543 0.81

14 15 0.008 19 5.1 0.1 21 48 540 567 536 573 0.77

15 15 0.02 48 3.9 0.0 20 45 567 592 560 596 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.065	1.5e+02	2.2	0.0	24	47	74	97	63	102	0.84
2	15	0.13	3e+02	1.3	0.0	23	51	101	129	96	130	0.81
3	15	0.033	79	3.2	0.1	21	48	127	154	125	159	0.84
4	15	0.22	5.3e+02	0.5	0.1	21	51	155	185	151	187	0.82
5	15	0.25	5.9e+02	0.4	0.1	21	43	183	205	175	208	0.82
6	15	0.0055	13	5.7	0.1	20	50	210	240	200	243	0.82
7	15	0.0023	5.6	6.9	0.1	22	52	268	298	261	300	0.85
8	15	0.1	2.4e+02	1.6	0.0	23	48	297	322	294	327	0.84
9	15	0.043	1e+02	2.8	0.0	21	46	323	348	319	355	0.83
10	15	0.59	1.4e+03	-0.8	0.0	21	44	351	374	346	378	0.84
11	15	0.00017	0.41	10.5	0.0	18	52	425	459	419	461	0.88
12	15	0.26	6.2e+02	0.3	0.0	21	47	484	510	478	516	0.79
13	15	0.06	1.4e+02	2.4	0.1	21	45	512	536	499	543	0.81
14	15	0.008	19	5.1	0.1	21	48	540	567	536	573	0.77
15	15	0.02	48	3.9	0.0	20	45	567	592	560	596	0.79

Sequence Information

Coding Sequence: ATGTGTTttttagaaaagaaagaaacaaatgaaaatagtAATTGCGATGATAAAAATAGTGATAAaactaatgataatgatgaaaatagaACTTTCCTACAACCTTGTAAAGTAGAAATTGAAGAATACCATTCTGATAAGAATCaaacaaatgatattttaaatccTATAGAAGAAAATCAGACACAATTAATCCAATCAgagaaaatcaattataacacaaatacatgtaatatttgtaataaaacattttcaacaaaatcctATTTAAAAACACACATTGAAATCCATAAAGATGAGAAACTCCATCAATGTACTGTGTGTGGTAAAACGTTTACATTAgcttcaaatttaaaaacacattTAAAAATCCATACCGGTGAAAAACCGCATCaatgtaatatttgttcaaaGAATTTCACATCAAGTACAACGTTAAAAGTACATTTTCGTATCCACACCGGTGAGAAACCATACCATTGTAATACGTGTGGTAAAGATTTTTCGGTTAGGGAGAATTTAAAGAAGCACATGCGTATCCATACTGGTGAGAAACCGTATCAATGTGATATTTGTGGTAGAAGTTTTGCTGATAGTGTCACATTAAAATCACATAAAAGAACACATACCGGTGAGAAACCGTATCATTGTACATTGTGTGGTAAGAATTTTActgtaaaaaacaatttacgaTCACATTTACGTACACATAGTTATGCAGCAAAAGCTAAAAATAACACATCCGATACGACTGTTGTACAAGATGAAGATTTAATACAACATTCAACAACACAAACTGGTGAGAAATTGTATGTTTGTAGTGTATGTAAAGAAAGTTATAAAGATGTAGATGCATTAAGACGACATTTACATTTACATAGCGGTATAAAACCACATCAATGTAATATTTGTATGAAAAGTTTCACATCAAGTGCCACATTAAAAGTACATTTTCGTATCCACACCGGTGAGAAACCGTATCATTGTAATATATGCGGTAAAGATTTTTCTATTAgagaaaatttaaagaaacataTGCGTACACATACCGGTGAGAAACCGTATCAATGTGATCTTTGTGGTAAAAGTTATACAAATAGTGGATCATTAAAATCACATGTTAGAAAACATAATATCGATCCAGATAATGATTTTGATATATTAGAAAAGAATTATACGGTTAAAGAATCACCAGatacaaatgaaaaaatattcatttgtaatatttgtaatgataattataaagatcaaatgttattaaaaGAACATATACAATCGCATAGTGATGGTAAATATGTTTGTGAAATTTGTAGtaagatttttacaaaaagtaGTAATTTATATACACATTTACGTTTACATAATGGTGATAAACCACATCCATGTAGTATATGTAATCGACGATTTCCATCGAAATCACGTTTAAATATCCATTTAAAAGTACATACCGGTGAGAAACCGTTTAGTTGTGATCTATGTGATGCACGATTTTCAGTAAAAGGTTCATTAAAAGCACATTTTCGTATCCATAATGATGAGAAACCATTCAATTGTCATATATGTAATAAAGGTTTTCGTGTGAAATGTGCTTTAACTGTACATTTACGTGCACATAATGATGAAAAACCATTCAcatgtaatatttgtaataaaagttaTAGAGTTAGAGCTATTTTAAATGAACATATGAAATCGCATACTAGTGAGAAACCGTTTGTTTgtgaaatttgcaataaagGCTTTCTACGGAAATGGTCAttgaataaacatttaaaaacacaTACGGAGAGGAATAAAGGTGATATAGAAGAGAAAGGTTTTGAATGA
Protein Sequence: MCFLEKKETNENSNCDDKNSDKTNDNDENRTFLQPCKVEIEEYHSDKNQTNDILNPIEENQTQLIQSEKINYNTNTCNICNKTFSTKSYLKTHIEIHKDEKLHQCTVCGKTFTLASNLKTHLKIHTGEKPHQCNICSKNFTSSTTLKVHFRIHTGEKPYHCNTCGKDFSVRENLKKHMRIHTGEKPYQCDICGRSFADSVTLKSHKRTHTGEKPYHCTLCGKNFTVKNNLRSHLRTHSYAAKAKNNTSDTTVVQDEDLIQHSTTQTGEKLYVCSVCKESYKDVDALRRHLHLHSGIKPHQCNICMKSFTSSATLKVHFRIHTGEKPYHCNICGKDFSIRENLKKHMRTHTGEKPYQCDLCGKSYTNSGSLKSHVRKHNIDPDNDFDILEKNYTVKESPDTNEKIFICNICNDNYKDQMLLKEHIQSHSDGKYVCEICSKIFTKSSNLYTHLRLHNGDKPHPCSICNRRFPSKSRLNIHLKVHTGEKPFSCDLCDARFSVKGSLKAHFRIHNDEKPFNCHICNKGFRVKCALTVHLRAHNDEKPFTCNICNKSYRVRAILNEHMKSHTSEKPFVCEICNKGFLRKWSLNKHLKTHTERNKGDIEEKGFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00929732;
90% Identity: iTF_00929732;
80% Identity: iTF_00929732;