Ltri003358.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- bab2
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000385.1:35332-37160[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-15 3.1e-12 45.7 0.1 3 45 358 400 356 400 0.92 2 2 3.1 4e+03 -2.7 0.4 6 14 469 477 467 482 0.78
Sequence Information
- Coding Sequence
- ATGTGCGCGGCTCAACAATATTGTCTACGATGGAACAATCATCGTTCGAATTTATTGACTGTTTTCGATGAACTCCTGCAAAATGAGGCATTTACTGATGTTACATTAGCATGTGAAGGTGGTGGACCAATTAAGTGCCATCGTATGGTTTTGGCGGCATGTTCACCATATTTTCAAAACCTATTTACAGATTTGCCATGTAAGCAtcctgttgttgtattaaaagatGTTAAATATGGTGAAATTAAAGCAATACTTGAATATATGTATCGTGGTGAAGTGAATGTTGCCCAAGATCAATTAGCAGCCCTATTAAAAGTAGCTGAAGCACTTAAAGTTAAAGGTTTAGTTGAAGAGAATCGTTCAACGGGCACAAGTTTTTCAAGTCGTGAAGATGAACCAATGGATCAATCACCGACAGGCATTACAACATCAAATCAAAATGTACACAGTAGTAGCAACAATCAATCGCCACCCCATTCAACAAATATCCTATACAAAAATCCTTATAGTAGTATTTATACAGGCAAATCGAGTAGTAGTGAACGTAGTAGTGGGTCAAGAATGAATTTACCATTATGGGCAGTTCCCGGTTTACCGATACCACCTACTTCTGTTCCTAATCAAACTCATCCCCATACGGCGGCAACAGCTGCCGCCATGTTAAGCAGTTGTTATGAAGTAGCCAGTGATATGTCGCCATTAAGGAGGAAGAAATTATCAAGCCTTTTGATGAATAGAGATACACCAATCTTGAGGACGGTTCTAGGCCAAGGTCAAGCAGATTCCTCGCAACCTGTTAGTTTGGTATGTCATCCGGACAGTCATGAGCAACAATCAAATGGACCTGAACAGGAACGAATTGAAAAACACTTAAAGAATGAACCCTCAGAAGATGCTCAATCACCTTATACTGATTTTACTGTAATGAATGACGATGAAGAGAAACCAAAACTTGCTGTCCCATCATCGTCACCCCAATCttattcaaatgaattacGTAGCTCCGGCATTGCCACTTATGTTCCAACACAAAAACCGGAATGGAAACGTTACAAGCAATATACAAGAAATGATATTATGTCAGCTATTGAGGCAGTAAGAAATGGTATGTCAGCTTTACAAGCTGCACGAAAATATGGAGTACCTTCACGGACTCTTTACGATAAAGTTAAAAAATTAGGAATAACTACTAGCCGACCATTTAAAAGAGGCTCTAATGGTAGTTCAGCATGTTTCCCATATAATATAAGTGGTACAAGTTCACCATATAGTGGACATTTATCAGAAAATGATGATCCAccaagtaataataatacatcatTATTGGATGCAACATTTTTACAACATGCCTTTGAAGGTCGTAGTGGTGATGATCGTGAAACATTAACAGCAATggctgttgctgctgctgcacATGCTGTTGTTTCAAGTCATTCAACAAGTCCACCAAGTCATGTACCAACTAGCCCCAGTCCAAGTCCAACATTAATGAAATATATGCGACAAAATAGTATGACACCATCACCAGCACCTGGTAGTGATCATCAACATAGTGAAACAAATGGTAGTTCAGAACGTGaacgtgatgatgatgatgatcaagtTGAAGATTTATCAATTGGTAGAAAACAAGAATCACGTGTTATTATGCCACCAATGAATCAAgtatcaacaattatcaaaaaagaggaattattaaaagatatgATTAAAGAAGAAGGTAGAAGCAGGGAGGTAAGCGTTGATGAAACGGAATAA
- Protein Sequence
- MCAAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACEGGGPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYGEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSTGTSFSSREDEPMDQSPTGITTSNQNVHSSSNNQSPPHSTNILYKNPYSSIYTGKSSSSERSSGSRMNLPLWAVPGLPIPPTSVPNQTHPHTAATAAAMLSSCYEVASDMSPLRRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSHEQQSNGPEQERIEKHLKNEPSEDAQSPYTDFTVMNDDEEKPKLAVPSSSPQSYSNELRSSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSSACFPYNISGTSSPYSGHLSENDDPPSNNNTSLLDATFLQHAFEGRSGDDRETLTAMAVAAAAHAVVSSHSTSPPSHVPTSPSPSPTLMKYMRQNSMTPSPAPGSDHQHSETNGSSERERDDDDDQVEDLSIGRKQESRVIMPPMNQVSTIIKKEELLKDMIKEEGRSREVSVDETE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01277622;
- 90% Identity
- iTF_01566165;
- 80% Identity
- iTF_00929687;