Basic Information

Insect: Lycophotia porphyrea
Gene Symbol: Znf296
Assembly: GCA_950005105.1
Location: OX465383.1:23861413-23875672[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.1 5e+02 2.2 2.9 1 21 153 173 153 174 0.93

2 14 0.00046 0.038 15.2 0.6 2 20 187 205 186 209 0.95

3 14 0.0022 0.18 13.0 1.1 2 23 249 270 248 270 0.96

4 14 2.4 2e+02 3.5 0.4 3 21 278 296 277 297 0.93

5 14 1.2 1e+02 4.4 0.2 2 23 347 369 346 369 0.90

6 14 0.0077 0.64 11.3 0.5 1 20 374 393 374 395 0.92

7 14 3.8e-05 0.0031 18.6 0.8 1 23 403 426 403 426 0.98

8 14 2.6e-05 0.0022 19.1 2.2 1 23 447 469 447 469 0.98

9 14 6.2e-06 0.00052 21.0 3.8 1 23 476 498 476 498 0.99

10 14 1.3e-07 1.1e-05 26.3 2.3 3 23 512 532 510 532 0.96

11 14 3e-05 0.0025 18.9 3.2 1 23 538 560 538 560 0.99

12 14 2.6e-06 0.00022 22.2 2.6 2 23 567 588 566 588 0.96

13 14 1.5e-07 1.3e-05 26.1 1.4 1 23 594 616 594 616 0.99

14 14 0.0037 0.3 12.3 0.1 1 23 622 644 622 644 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.1	5e+02	2.2	2.9	1	21	153	173	153	174	0.93
2	14	0.00046	0.038	15.2	0.6	2	20	187	205	186	209	0.95
3	14	0.0022	0.18	13.0	1.1	2	23	249	270	248	270	0.96
4	14	2.4	2e+02	3.5	0.4	3	21	278	296	277	297	0.93
5	14	1.2	1e+02	4.4	0.2	2	23	347	369	346	369	0.90
6	14	0.0077	0.64	11.3	0.5	1	20	374	393	374	395	0.92
7	14	3.8e-05	0.0031	18.6	0.8	1	23	403	426	403	426	0.98
8	14	2.6e-05	0.0022	19.1	2.2	1	23	447	469	447	469	0.98
9	14	6.2e-06	0.00052	21.0	3.8	1	23	476	498	476	498	0.99
10	14	1.3e-07	1.1e-05	26.3	2.3	3	23	512	532	510	532	0.96
11	14	3e-05	0.0025	18.9	3.2	1	23	538	560	538	560	0.99
12	14	2.6e-06	0.00022	22.2	2.6	2	23	567	588	566	588	0.96
13	14	1.5e-07	1.3e-05	26.1	1.4	1	23	594	616	594	616	0.99
14	14	0.0037	0.3	12.3	0.1	1	23	622	644	622	644	0.97

Sequence Information

Coding Sequence: ATGGCTACTACTCTGGAAACCGACATAAAAATTGAAGAATTGTGTAGAACATGTTTGTCGAAGGATAATGAACTATTCTCGATATTTGATGTATTACTTGGCTCCACATTTACTTTAGATTACATAGTAACTGCAACTACTGGGTTAaagATAGACAAAAATGATGGTTTGCCTTCAACAATTTGCTGCGAGTGTAAGGAAAAAGCATCACAGGCATttgaatttaagaaaaaatcggAAGAAGCTAATATGTCCCTTAGAgggatattattaaaaaaggaaaagaaagaaaactcaACGAAAAATTTAAGTCAAACTAATACATCAGATGTGAAAACTGAAGATTTGTCATCACATGACAATGATGACAATGCCGATAGTGATTTCAATGATGCAGAAATACATGAACAAGAAGATGTTAAAATTGAGCATGGGAGCTTGGAACGCAAGTCATGTTTTGTATGCAAAAGCTGCTTAGTCGTTTTTGATACACACTGTAAACTGCATGAACATGAGAAGATATGCATAAAAGTTGAGTGTGATGAAACCAACCGCACTTACTGCCCACTTTGCGGTACGTGCTACAATGGTGCAGAAAACTTGACGAAACATATGTGGGAAAATCATTCAGACCTTATGGGCCCAAAAAAGAGAGGCAGACCTAAGAAGATGTTAACTAGTACCATTCTTAACAAGTTATCAGAAAATGGATTTTGCATAACATCAATGCCAGCTAAAAAGATTGAGTGTGTATTTTGCAAGCAACATTTTGAAACCAAAGAAGAATTAAGATCACATGCTATAACTCACAAAGaTTCGAAAGTGCTGCTTTGTGTACTGTGCAAGAAAATATACATAGATAGGATAAAGTTTGATAACCATATCTGCATTGAAGAGAAAGCTGATTTAAACAATGTAGAAAATGATTCGGCTAAAACAGATACAACTGCAAAAAGGCCCCAAAATTTTCCGTCGGAACTAACACTGCGAGAATTTCTAGATCCGAATATGGATATGGAGCATATCAACTTGCTTATTGTATGTAGTACTTGTAGCTGCATATTGCCGACAGAAACGGATCTCATTAACCACCGCGATGCCGAGCATCCGGAACTGTCTCACCGGTGCAACCTCTGCACTAAGtCGTTTGCTTCTTTGCGGTCAGCGGCGCGCCACAGAAGCATTTGTAAggaaattgaaagaaaatataaatgtaatacgTGTGGACTGAAATTCgcttatgaaatatctttaaataagCACATTCTACGATATCATGAAGGACAAAGCGTGTCGGTTAAATTTATTGATTCTAAAACCAAAAGAGAAGAGAGACAGTTTCAGTGCGATACTTGCAATAGAAGTTTTTACAAGAGAGACCTACTAGTTAAACACACTAAAATACACATGCCAATCGAGAACTTCTTCCAATGTGACGTTTGTGAAAAGAAGTTTCACAGGAGTGACAATCTCCGCTCTCACAAACGAGTTCATCAGTCGCAGCGCGAAAAGACTTCGTCTAGCAACTGCTTATGCCTTTACTGTGGCCGCAGTTTCTCTAACTCGTCGAACTTAATCGTACACATGCGCCGCCACACCGGAGAGAAGCCCTACAAGTGTGATTTTTGTGGCAAAGGTTTTCCAAGATCTTCCGATCTTCAGTGCCACAGAAGATCTCATACTGGCGAGAAACCTTGCATATGCCGTGTTTGTGGTAaaggtttttcgCGCAGCAACAAGCTGTCCCGGCACATGCGCGTGCACACTGGCCAGCGTCCATACAAGTGCACGTACTGCGAGAAGGCATTCTCGCAGAGCAACGACCTCAACCTGCACATCCGCCGACACACCGGCGACCGGCCATACATCTGCGAAGTCTGCGGCGACAGATTTATACAGGGTACCGCATTGCAGAATCACCGAAGAGCTCATGGTCACTTTCCTACTCCTCCCGAAGAGGCTCCTTCCGAAGTGCAAGCACAGACTTTTACAGTCCAGAGTATAAACCATAATAATAGTCACTAA
Protein Sequence: MATTLETDIKIEELCRTCLSKDNELFSIFDVLLGSTFTLDYIVTATTGLKIDKNDGLPSTICCECKEKASQAFEFKKKSEEANMSLRGILLKKEKKENSTKNLSQTNTSDVKTEDLSSHDNDDNADSDFNDAEIHEQEDVKIEHGSLERKSCFVCKSCLVVFDTHCKLHEHEKICIKVECDETNRTYCPLCGTCYNGAENLTKHMWENHSDLMGPKKRGRPKKMLTSTILNKLSENGFCITSMPAKKIECVFCKQHFETKEELRSHAITHKDSKVLLCVLCKKIYIDRIKFDNHICIEEKADLNNVENDSAKTDTTAKRPQNFPSELTLREFLDPNMDMEHINLLIVCSTCSCILPTETDLINHRDAEHPELSHRCNLCTKSFASLRSAARHRSICKEIERKYKCNTCGLKFAYEISLNKHILRYHEGQSVSVKFIDSKTKREERQFQCDTCNRSFYKRDLLVKHTKIHMPIENFFQCDVCEKKFHRSDNLRSHKRVHQSQREKTSSSNCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICRVCGKGFSRSNKLSRHMRVHTGQRPYKCTYCEKAFSQSNDLNLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFPTPPEEAPSEVQAQTFTVQSINHNNSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00072259;
90% Identity: iTF_00446431;
80% Identity: -