Lyun002867.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000005.1:2003547-2031893[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.7 5e+02 2.7 6.6 1 23 362 385 362 385 0.96 2 19 2.3 2.4e+02 3.7 3.7 1 19 420 438 420 443 0.87 3 19 3.9e-05 0.0042 18.7 2.7 2 23 527 549 526 549 0.96 4 19 0.032 3.4 9.5 0.4 2 23 557 579 556 579 0.90 5 19 0.0002 0.021 16.4 0.1 1 23 602 624 602 624 0.98 6 19 0.00041 0.044 15.5 1.0 2 23 628 649 627 649 0.97 7 19 7.9e-05 0.0084 17.7 0.6 2 23 674 695 673 695 0.92 8 19 0.33 35 6.3 3.6 1 23 720 742 720 743 0.94 9 19 0.019 2 10.2 1.6 2 23 755 776 754 776 0.98 10 19 2.5e-05 0.0027 19.3 5.5 1 23 806 828 806 828 0.99 11 19 0.48 51 5.8 0.8 3 23 853 873 851 873 0.97 12 19 0.00098 0.1 14.3 1.7 1 23 893 915 893 916 0.95 13 19 0.047 5 9.0 0.3 2 23 927 949 926 949 0.95 14 19 2.9e-05 0.0031 19.1 0.2 1 23 970 992 970 992 0.95 15 19 0.00067 0.071 14.8 0.2 1 23 1024 1047 1024 1047 0.95 16 19 0.026 2.8 9.8 0.4 3 23 1059 1079 1057 1079 0.96 17 19 3.4e-05 0.0036 18.9 1.1 1 23 1091 1113 1091 1114 0.95 18 19 1.3e-05 0.0014 20.2 1.4 1 23 1122 1144 1122 1144 0.99 19 19 0.023 2.5 9.9 0.1 1 23 1164 1187 1164 1187 0.95
Sequence Information
- Coding Sequence
- ATGAGTGAACGAAGATTGGGAAATTTTAATTCGTGCTGCCGATTGTGTTTGTCCGAGAAATTGGGAACGTTGAAGTCCATTTTTGAAGATGAATCGAGAGGTCAGGAGATTGCCAAGAATATCAAAACTTCTCTTGGCGTtcaaaTTCACTCGACGGATAAGTTAACAACAATGATTTGTAATACTTGCTCGGAACAAGTTAACAATTGGCACAGCTTTAGGCGAGGCTGTATTGAAAATCAAACAACACTAATAAGAAGAATGAATTCATTTTTCCAAAGCAACATGGGTAATATTaccATACAAATTAAAGACGAAGTGGTTGAACCAGACGAAAGACCTATCGACGTTGAGGACGATGATGTTGTACATGTAAAGGCCGAACGTGTAGATGAGACTGAAAACCTCGACGCCTCATATGACGGACGAGAAATGTTAGAAGACAATGCCTACGAATTACCTCCACCTTTAACACCTCACATGCCAGATCAGCTGTCGCACATGGACAATGATAATAATGAAAATGGCATGTCTGATCATCAAGATGACGACGACGATGACGATGGCATGAGTATGTTGGTACCATTTGTAGAATTTTCCGAAGGAGACACGTTATGTATGCCCAATAATCGAGATATATCAATTATGGGCGACTCGTCTATTAATGGTATGTCGTCCAATGAAGAaactgaatttgaaaaaatacagtTTGCAGCAGAATTGCGTCTACAACAACGTTCGGTTAATTTAAATCTGGTgaataatacagaaaatatatctTCTCTTACGAATGTCGAAGTTAGATATTTGGAAAAGGCTCGAGAGATTGTAAAAATGGCCGAATCCTTAACTTGCACTTGCCACAAAAAGTCATTTCCCGAGTATAAAGACTTGTTTGTTCATTTAGAAAACCAGCGCAGTTGGTTTGCTATGTTAACTTGTTACAATTGTTTGACAACCTTCGGCGATAAACCTACGTACCTAAAACATTTCTGTCAGTGTACTAACGATGATTTGGAAAGCCTTAAAAGGTTTGTTAAAGAACCTGTGAATCCCGAGATAAAAATTCGTCtttatcaaaactttaaatGCGTCAAATGTAACTTTACTTTTGGCTTCCATGAAGATTACTGCGATCACTTTAACGTTAAGCATATAGAATTTTCACAAGATAATGTGCTTAGTTGTGTGTGCTCGGAAGTATTTCACAATGTAGAAAATTTCAAACAGCACTGTTACATTTCCTGCTTTTTAACTCACTTTTGTGACGTTTGCTTTAAAGACTTTTCGACTATCGAAGAATTTAGGTTACACTGCGAAAGAGTTCACGACGACGCCGAAGGTGATACCATCGAATCTTATGACGCATATCTCAAGTGTGAGTTTGGCAGCGTCGAGGAGAATGAACCTTCAAACAGACGATCTTTGCCTCCCGAATTTCGTCAACACGATGACGATACGCGTGCGGCAAAAAGACGTCGCACCGTTCAGCTACCGGCTTCCAAGGATAACGCTTCACGATCTAATATGGTCATCAACCCTCACGCTATTCGTAACATGAAATCGTCAAACCCTTCAACCTGTCCCGATTGTGGAAAACATTATTCCTCCTACCACAACATGTTACGACATTATAGGATAGCGCACGATGCTTCGGGAAAAATTCTAACATGTTCTTACTGTTCCATTAAATTTAGACTGTTTTCGGAATTGAGAGATCACGAATTAGCCGAACACCCGCAAGAGGCCGAAGCCGATAGTAACGTTGACGTTAAACCTCAAATATCTCCCGAGCAAATGAACTTTTCTTGTCCCGATTGTGGAAAGTTGTCCAAAACGATCAGCGAATGGAGAATTCACATGGAAACTCATCCAAAGAAAACCTGTTCGGAATGCGACAAACAGTTTACTTTACAAAGTGAACTCGATCAGCACCGCAGCGTCCATTTGAATATTAAAGTTTACCGCGATTCCAAAACGCAAGATTACAAAAGCACTATGATCAGTCCTTCatctttaatttgtaaaatttgtgacaagACCTTCACCACAAAGAATGAATTGAGCGAACACAATTTACTTCATGAAAGCATGCCCGTTTTGAGCGCACACAACGATCAATCTGAGCCGGAAGAGAAGCCCGAAATCAATCGTAAATATAGTTGCACACAGTGTAATAAACATTATGCTAGTTATGGTGGTATTTGGGATCACAATAAGAAGCACCACGGCGGTAAAACCATCGACAATGAATATCCAAAGCAATGCACTTACTGCGAAAAAGTCATATCTTCGCGTTGCGGATGGGTTAATCATCTTAGAATGCACGAACGTTTGCTCGAACAACCAAAACCGACTCCGATAGAAACGCGTCGTCAGAGTAGAACTAGCGCCAATGATGATGGCGAGTCGTATTACACGTGCAAGAGATGTTTTAAAGTGTTCTCGAAAAAATACGATTACAAGAACCACATGAGGAGTCACGGGATTAATTTGGCTTCGAATACTTCAAACAGAAGTAGTACAAAAACCGGAAAGGTTAATAAGACTTATTGGTGTGATGTTTGTCATCAGGCTTGCCCTGGTTATGCCGAATTACAAGAACACAAAAAAGAACATTTaggCAAGAAAACTCCAAAAGTGCTCCCACAAGTgattaatcaaaaacaaaacgaTTTTTCGTGTAATTTGTGCAACGTAACACTGACGAGCAATTTTGCTCTAATTCGTCATATGGATAAACATCACTCCAACAAAGATTCTAAATCGGTTTcggtttattgtaaattttgtaaaattccaTTCCAAGATATGGAAGAATTTAATGATCACATGGAGAAGGAACATGAAAAagcacaaataaaacaaatcaaacagaCCAACAACGACAAAAATACCGGTAAACGCTTTACTTGCACGGTTTGTAAAAAATCCTTTGATAATGCTTCCGCCTTGGCCTCGCATCAAGGTTGGCATAAAAGAGGCAAGTTCGGTAAGAAGGTTTTGAATCCAAAAGCGAAAGGTTCCTCGAGGATAATTACGCCTCCTCAGGTTCCGGTTTCAAATCCATACCCTTGCCGAAATTGCTCGAGAACGTTTGTAAACGAAACCGCCTTACAGATCCACATTTTGGAAACGCACAGAAATATTAACGCGACATTATTGTCGACCATTTGTACtagttgtaaaataaattttgattctaaAGCCGCTTATGATCGTCACATGCAATTACACGTAGTGGTTGAAAATCAAAGACAAATGAAACCGTATCCATGTCAATATTGTAATGCCGGATTTACCAGAAGTGATACTTTGAATGCTCATGTGAAACAACATCACAAAGAATTTTACAACGACATTTTTAAATGCACCTTTTGTGACCGAGTGTTTGATAAGCAAAATGCGCTTACGATTCATTTGAAAACGCACGATAGACAACGCTTGTCGGGCGAAATCGCATCAAAACCTAGTGGTagtaaaaatgtttacttttgttCAATTTGCAAATTAGGTTTTGCTATTGCCAAAGAGTTACGACAACACGTCGTTACGGCTCAtccattttga
- Protein Sequence
- MSERRLGNFNSCCRLCLSEKLGTLKSIFEDESRGQEIAKNIKTSLGVQIHSTDKLTTMICNTCSEQVNNWHSFRRGCIENQTTLIRRMNSFFQSNMGNITIQIKDEVVEPDERPIDVEDDDVVHVKAERVDETENLDASYDGREMLEDNAYELPPPLTPHMPDQLSHMDNDNNENGMSDHQDDDDDDDGMSMLVPFVEFSEGDTLCMPNNRDISIMGDSSINGMSSNEETEFEKIQFAAELRLQQRSVNLNLVNNTENISSLTNVEVRYLEKAREIVKMAESLTCTCHKKSFPEYKDLFVHLENQRSWFAMLTCYNCLTTFGDKPTYLKHFCQCTNDDLESLKRFVKEPVNPEIKIRLYQNFKCVKCNFTFGFHEDYCDHFNVKHIEFSQDNVLSCVCSEVFHNVENFKQHCYISCFLTHFCDVCFKDFSTIEEFRLHCERVHDDAEGDTIESYDAYLKCEFGSVEENEPSNRRSLPPEFRQHDDDTRAAKRRRTVQLPASKDNASRSNMVINPHAIRNMKSSNPSTCPDCGKHYSSYHNMLRHYRIAHDASGKILTCSYCSIKFRLFSELRDHELAEHPQEAEADSNVDVKPQISPEQMNFSCPDCGKLSKTISEWRIHMETHPKKTCSECDKQFTLQSELDQHRSVHLNIKVYRDSKTQDYKSTMISPSSLICKICDKTFTTKNELSEHNLLHESMPVLSAHNDQSEPEEKPEINRKYSCTQCNKHYASYGGIWDHNKKHHGGKTIDNEYPKQCTYCEKVISSRCGWVNHLRMHERLLEQPKPTPIETRRQSRTSANDDGESYYTCKRCFKVFSKKYDYKNHMRSHGINLASNTSNRSSTKTGKVNKTYWCDVCHQACPGYAELQEHKKEHLGKKTPKVLPQVINQKQNDFSCNLCNVTLTSNFALIRHMDKHHSNKDSKSVSVYCKFCKIPFQDMEEFNDHMEKEHEKAQIKQIKQTNNDKNTGKRFTCTVCKKSFDNASALASHQGWHKRGKFGKKVLNPKAKGSSRIITPPQVPVSNPYPCRNCSRTFVNETALQIHILETHRNINATLLSTICTSCKINFDSKAAYDRHMQLHVVVENQRQMKPYPCQYCNAGFTRSDTLNAHVKQHHKEFYNDIFKCTFCDRVFDKQNALTIHLKTHDRQRLSGEIASKPSGSKNVYFCSICKLGFAIAKELRQHVVTAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273004; iTF_01294115; iTF_01292165;
- 90% Identity
- iTF_00273004;
- 80% Identity
- -