Rful016718.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996559.1:10623558-10647908[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 8.9e-05 0.0026 19.0 2.3 2 23 214 236 213 236 0.96
2 20 3.5 1e+02 4.5 1.1 2 20 360 378 359 380 0.91
3 20 1.5 44 5.6 6.4 1 23 409 432 409 432 0.97
4 20 0.00012 0.0034 18.6 2.7 2 23 576 598 575 598 0.96
5 20 0.5 14 7.2 0.3 2 23 606 628 605 628 0.89
6 20 0.00072 0.021 16.1 0.1 1 23 653 675 653 675 0.98
7 20 0.0012 0.034 15.4 0.6 2 23 679 700 678 700 0.96
8 20 0.00023 0.0068 17.7 0.6 2 23 725 746 724 746 0.92
9 20 0.38 11 7.5 3.1 1 23 771 793 771 794 0.94
10 20 0.16 4.7 8.7 1.6 2 23 806 827 805 827 0.98
11 20 7.6e-05 0.0022 19.2 5.5 1 23 857 879 857 879 0.99
12 20 3.9 1.1e+02 4.4 0.2 3 23 904 924 902 924 0.96
13 20 0.0026 0.075 14.4 1.7 1 23 944 966 944 967 0.95
14 20 0.14 4 8.9 0.3 2 23 978 1000 977 1000 0.95
15 20 8.6e-05 0.0025 19.0 0.2 1 23 1021 1043 1021 1043 0.95
16 20 0.0014 0.041 15.2 0.1 1 23 1076 1099 1076 1099 0.95
17 20 0.0037 0.11 13.9 0.7 3 23 1111 1131 1109 1131 0.96
18 20 3.1e-05 0.00089 20.4 1.1 1 23 1143 1165 1143 1166 0.96
19 20 0.00013 0.0039 18.4 1.4 1 23 1174 1196 1174 1196 0.99
20 20 0.052 1.5 10.3 0.3 1 23 1216 1239 1216 1239 0.95

Sequence Information

Coding Sequence
ATGAGTGAACGAAGATTGGGAAATTTTAATTCGTGCTGCCGATTGTGTTTGTCCGAGAAATTGGGAACGTTGAAGTCCATTTTTGAAGATGAATCGAGAGGTCAGGAGATTGCCAAGAATATCAAAACTTCTCTTGGCGTTCAAATTCATTCGACGGATAAACTAACAACAATGATTTGCAATACTTGTTCTGAACAAGTTAAGAGTTGGCACAGCTTCAGGCGGGGCTGCATCGAAAATCAAACGACGCTAATAAGAAGAATGAATTCATTTTTTCAAAGCAACATGGGTAATATTACTATACAAATTAAAGATGAAGTGGTGGAACCGGATGAAAGACCCATCGACGTCGAAGATGATGATGTTGTACATGTAAAGGCTGAACGAGTAGATGAGACTGAAAACCTCGAAGCTTCGTATGATGGAGGAGAAGTTTTAGACGACAATTCTTATGAATTACCTCCACCCTTAACACCTCACATGCCGGATCATTTGAGCAATGACAATGATGAAAACATGATGTCTGATGATCAAGACGACGACGATGACAGCATGAGTATGTTGGTACCGTTTGTAGAATTTTCCGAAGGCGACACATTATTGAACGGTGAACTGGGTAATCATAATGGAGACGACAAAACTTGCACAATTTGTGGGAAACATTTCAGCACTCCAGCAAATCGTAAGAAACACGAACGAATGGTTCACTTACGTAAAAGTAATAAAAGTTTTAAAACGCTAAAGAACATTTTAAATGGTATGCCCAATAATCAAGACATATCAAATATGGGCGACTCGTCTATTAATGGTATGTCGTCCAATGAAGAAACTGAATTTGAAAAAATACAGTTTGCAGCGGAATTGCGTCTACAGCAACGTTCAGTTAATTTAAATCCGGTGAACAATTCAGAAAATATTTCTTCTCTCACGAGCGTCGAAGTCAGATATTTGGAGAAGGCTCGCGAAATTGTAAATATGGCAGAATCGTTAACCTGCATTTGCCACAAAAAGTCATTTCCTGATTATAAAGACCTTTTTGTCCATTTGGAAAACCAGCGTACTTGGTTTGCTATGTTAACGTGTTACGATTGTTTAACAACGTTCGGTGATAAACCCACGTATATTAAACATTTTTGTATGTGTATTAACAACGATTTGCAAAGCCTCAAACGTTTTGTTAGAGAGCCCGTAAATCCTGAGATAAAACTTCGTCTTTACCAAAATTTTAAATGTGTTAAATGCAACATTACATTTGCTTTTCATGAAGATTATTGCACACATTTTAACATGAAACACATAGAATTTTCAGAAGATAATGTGCTTAATTGTATGTGCTCGGAAGTATTTCACAATGTGGATAATTTCAAACGGCACTGTCACTTTTCCTGTTTTTTGAGTCACTTTTGCGACGTTTGTTTTCAAGACTTTGCGACTATTGAAGAATTTAGGTTACACTGTGAAAGAGTCCATGATGACGCGGAAGGTGATACTATTGACACTTATGATACCTATCTGAAACGTAAATTCGGAAGCGTGGATGAAAATGAACCGACAAACAGACGATCTTTGCCTCCTGAATTTCGTCAAAACGAAGACGATGCGCGTTCGGCAAAAAGACGTCGCACCGTTCAGTTACCAGTTTCCAAAGACCTTGGAAACACCGCTCGTTCCAATATGGTTATTAATCCACATGCTATTCGTAACCTGAAATCATCAAACCCTTCAACTTGTCCAGATTGCGGAAAACACTATTCGTCTTATCACAACATGTTACGCCATTACAGGATAGCGCACGATGCTTCGGGAAAGATTCTAACGTGTTCTTTCTGTTCCATCAAATTTAGACTCTTCTCTGAATTGAGAGATCACGAAATAGCGGAACACTCACAGGAAACGGATGCTAACGCTGACGCAGACGAAGACGTTAAACCTCAAATATCTCCAGAGCAAATGAACTTTTCATGCCCTGATTGTGGAAAGCTGTCCAAAACGATAAGCGAATGGAGGGATCACATGGAGACGCATCCGAAGAAAGTCTGTTCCGAATGCGATAAACAGTTCACTTTACAAAGTGAACTGGACCAGCACCGCAGCGTCCATTTGAATATTAAAGTTTACCGCGATTCGAAAACGCAAGATTACAAAAGCACAATGGTCAGTCCTTCATCGTTAATTTGCAAAATTTGCGACAAGACTTTCACCACCAAGAACGAATTAAGCGAGCATAATTTGCTGCATGAAAGCATGCCTATTTTGAGTGCACAAAATGATCTCGAAGAACCGGAAGAGAAGCCTGAAGTCAATCGTAAATATAGTTGCACGGAGTGCAACAAACACTACGCCAGTTATGGCGGTATTTGGGATCACAACAAAAAGCATCATGGTGGGAAAATGACCGATACTGAGTATCCAAAACAATGCACTTACTGTGAAAAAATTATATCTTCACGTTGCGGGTGGGTTAACCATCTCAGAATGCATGAACGTTTGCTCGAACAACCAAAACCGACTCCAGTGGAAACGCGCCGGATGAGTAGAAATAGTAATAATGGCGATGGTGAGTCGTACTACACATGCAAACGATGCTTTAAAGTGTTTTCGAAAAAATACGATTATAAAAATCACATGAGAAGTCACGGGATTAATTTGTCTTCGAATACCTCCAATAGAAGTAGCACAAAAACTGGAAAGGTTATTAAAACTTATTGGTGCGATGTATGTCATCAAGCTAGCCCCGGTTATGCTGAATTACAAGAACATAAAAAAGAACATTTAGGCAAGAAAAATCCGAAACTGCTCCCACAAGTGATCAATCAAAAACAAAACGATTTTTCTTGTACTTTGTGCAATGTAACATTAACCAGTAATTTTGCCCTAATTCGTCACATGGAGAAACATCACACCAACAAGGACTCCAAATCAGTTTCGGTTTACTGTAAGTTTTGTAAAATTCCATTCCAAGACATGGAAGAATTTAACGACCACATGGAGAAGGAACACGAAAAAGCGCAAATAAAACAAATAAAACAGACCAACAATGATAAAAACACGGGTAAACGTTTTACTTGCACAGTTTGTAAAAAATCGTTCGATAACGCTTCCGCCTTGGCGTCGCATCAAGGCTGGCACAAGCGAGGCAAATTTGGCAAAAAGGTTTTGAATCCGAAAGCAAAAGGTAACTCGAGAATAATTACGCTGCCACCACAGGTTTCCATTTCAAATCCGTACCCTTGCCGAAGTTGCCCGAAGACGTTCGTTAACGAAACCGCCTTACAGATCCACATTTTGGAAACGCACAGAAATATTAATGCAACATTGTTATCGATGAATTGCAATAATTGTAAAATAAGTTTTGATTCTAAAGCCGCTTTTGATCGTCACATGCAGCTACACGAAGTGGTTGAAAGCCAGAGGCAACTTAAACCATATCCATGTCAATATTGTAACGCCGGATTTACAAGAAGTGATACTTTGAATGCTCACATAAAACAACATCACAAAGAATTCTACAACGACATTTTTAAATGCACTTTTTGCGAGCGGGTGTTTGATAAGCAAAATGCACTCACAATTCATTTAAAAACGCACGATAGACAACGCTTGTCGGGTGAAATGGCATCGAAACCCAGTGGTAGTAAAAATGTTTACTTTTGTTCAATTTGCAAGTTAGGTTTTGCTATTGCCAAAGACTTACGACACCACGTCGTTACGGCTCATCCTTTTTAA
Protein Sequence
MSERRLGNFNSCCRLCLSEKLGTLKSIFEDESRGQEIAKNIKTSLGVQIHSTDKLTTMICNTCSEQVKSWHSFRRGCIENQTTLIRRMNSFFQSNMGNITIQIKDEVVEPDERPIDVEDDDVVHVKAERVDETENLEASYDGGEVLDDNSYELPPPLTPHMPDHLSNDNDENMMSDDQDDDDDSMSMLVPFVEFSEGDTLLNGELGNHNGDDKTCTICGKHFSTPANRKKHERMVHLRKSNKSFKTLKNILNGMPNNQDISNMGDSSINGMSSNEETEFEKIQFAAELRLQQRSVNLNPVNNSENISSLTSVEVRYLEKAREIVNMAESLTCICHKKSFPDYKDLFVHLENQRTWFAMLTCYDCLTTFGDKPTYIKHFCMCINNDLQSLKRFVREPVNPEIKLRLYQNFKCVKCNITFAFHEDYCTHFNMKHIEFSEDNVLNCMCSEVFHNVDNFKRHCHFSCFLSHFCDVCFQDFATIEEFRLHCERVHDDAEGDTIDTYDTYLKRKFGSVDENEPTNRRSLPPEFRQNEDDARSAKRRRTVQLPVSKDLGNTARSNMVINPHAIRNLKSSNPSTCPDCGKHYSSYHNMLRHYRIAHDASGKILTCSFCSIKFRLFSELRDHEIAEHSQETDANADADEDVKPQISPEQMNFSCPDCGKLSKTISEWRDHMETHPKKVCSECDKQFTLQSELDQHRSVHLNIKVYRDSKTQDYKSTMVSPSSLICKICDKTFTTKNELSEHNLLHESMPILSAQNDLEEPEEKPEVNRKYSCTECNKHYASYGGIWDHNKKHHGGKMTDTEYPKQCTYCEKIISSRCGWVNHLRMHERLLEQPKPTPVETRRMSRNSNNGDGESYYTCKRCFKVFSKKYDYKNHMRSHGINLSSNTSNRSSTKTGKVIKTYWCDVCHQASPGYAELQEHKKEHLGKKNPKLLPQVINQKQNDFSCTLCNVTLTSNFALIRHMEKHHTNKDSKSVSVYCKFCKIPFQDMEEFNDHMEKEHEKAQIKQIKQTNNDKNTGKRFTCTVCKKSFDNASALASHQGWHKRGKFGKKVLNPKAKGNSRIITLPPQVSISNPYPCRSCPKTFVNETALQIHILETHRNINATLLSMNCNNCKISFDSKAAFDRHMQLHEVVESQRQLKPYPCQYCNAGFTRSDTLNAHIKQHHKEFYNDIFKCTFCERVFDKQNALTIHLKTHDRQRLSGEMASKPSGSKNVYFCSICKLGFAIAKDLRHHVVTAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00927976;
90% Identity
iTF_01294115;
80% Identity
-