Basic Information

Insect: Cantharis rufa
Gene Symbol: -
Assembly: GCA_947369205.1
Location: OX376308.1:15889328-15896138[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 6.5 8.7e+02 1.8 2.0 2 20 107 125 106 127 0.92

2 20 2.7 3.6e+02 3.0 6.6 1 23 156 179 156 179 0.96

3 20 1.3 1.8e+02 4.0 3.7 1 19 214 232 214 237 0.87

4 20 2.3e-05 0.0031 19.0 2.7 2 23 323 345 322 345 0.96

5 20 0.024 3.2 9.5 0.7 2 22 353 373 352 375 0.88

6 20 7.8e-05 0.01 17.3 0.2 1 23 398 420 398 420 0.98

7 20 0.00023 0.031 15.8 0.6 2 23 424 445 423 445 0.96

8 20 4.8e-05 0.0063 18.0 0.6 2 23 470 491 469 491 0.92

9 20 2.7 3.6e+02 3.0 1.2 1 23 516 538 516 539 0.93

10 20 0.011 1.5 10.5 1.6 2 23 551 572 550 572 0.98

11 20 1.5e-05 0.002 19.5 5.5 1 23 602 624 602 624 0.99

12 20 0.28 37 6.1 0.8 3 23 649 669 647 669 0.97

13 20 0.001 0.14 13.7 1.6 1 23 689 711 689 712 0.95

14 20 0.027 3.6 9.3 0.3 2 23 723 745 722 745 0.95

15 20 1.7e-05 0.0023 19.4 0.2 1 23 766 788 766 788 0.95

16 20 0.00067 0.089 14.3 0.1 1 23 820 843 820 843 0.95

17 20 0.00072 0.096 14.2 0.7 3 23 855 875 853 875 0.96

18 20 2e-05 0.0026 19.2 1.1 1 23 887 909 887 910 0.95

19 20 2.6e-05 0.0035 18.8 1.4 1 23 918 940 918 940 0.99

20 20 0.012 1.6 10.4 0.1 1 23 960 983 960 983 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	6.5	8.7e+02	1.8	2.0	2	20	107	125	106	127	0.92
2	20	2.7	3.6e+02	3.0	6.6	1	23	156	179	156	179	0.96
3	20	1.3	1.8e+02	4.0	3.7	1	19	214	232	214	237	0.87
4	20	2.3e-05	0.0031	19.0	2.7	2	23	323	345	322	345	0.96
5	20	0.024	3.2	9.5	0.7	2	22	353	373	352	375	0.88
6	20	7.8e-05	0.01	17.3	0.2	1	23	398	420	398	420	0.98
7	20	0.00023	0.031	15.8	0.6	2	23	424	445	423	445	0.96
8	20	4.8e-05	0.0063	18.0	0.6	2	23	470	491	469	491	0.92
9	20	2.7	3.6e+02	3.0	1.2	1	23	516	538	516	539	0.93
10	20	0.011	1.5	10.5	1.6	2	23	551	572	550	572	0.98
11	20	1.5e-05	0.002	19.5	5.5	1	23	602	624	602	624	0.99
12	20	0.28	37	6.1	0.8	3	23	649	669	647	669	0.97
13	20	0.001	0.14	13.7	1.6	1	23	689	711	689	712	0.95
14	20	0.027	3.6	9.3	0.3	2	23	723	745	722	745	0.95
15	20	1.7e-05	0.0023	19.4	0.2	1	23	766	788	766	788	0.95
16	20	0.00067	0.089	14.3	0.1	1	23	820	843	820	843	0.95
17	20	0.00072	0.096	14.2	0.7	3	23	855	875	853	875	0.96
18	20	2e-05	0.0026	19.2	1.1	1	23	887	909	887	910	0.95
19	20	2.6e-05	0.0035	18.8	1.4	1	23	918	940	918	940	0.99
20	20	0.012	1.6	10.4	0.1	1	23	960	983	960	983	0.95

Sequence Information

Coding Sequence: ATGCCCAATAATCAAGACATATCAAATATGGGCGATTTGTCTATTAATGGTATGTCGTCCAACGAAGAAACTGAATTCGAAAAAATACAGTTTGCAGCGGAATTGCGCCTACAGCAACGTCCAATTAGTTTAAATCTGATGAATAATTCAGAAAATATTTCTTCCCTCACCAATGTCGAAGTTAGATATTTGGAAAAGGCTCGAGAGATTGTAAAAATGGCCGAATCGTTGACTTGCACTTGCCACAAAAAGACGTTTCCAGAATATAAAGACCTGTTTGTTCATTTGGAAAACCAACGCGCTTGGTTTGCGATGTTAACTTGTTACAATTGTTTGACAACGTTCGGTGATAAACCCACTTATCTGAAACATTTCTGTCAGTGCGCTAACGACGATTTGGAAAGCCTCCGACGGTTCGTCAAAGAGCCCGTCAATCCCGAGATAAAAATTCGTCTCTACCAGAACTTTAAATGCGTTAAATGTAACTTTACTTTTGGTTTCCACGAAGATTACTGCGATCATTTTAACGTTAAGCACATCGAGTTTTCACAAGATAATGTACTTAGCTGTGTGTGCTCCGAAGTATTTCACAATGTGGAAAATTTCAAACAGCACTGTTACATTTCCTGCTTTTTGAGTCATTTTTGTGACGTTTGCTTTAAAGACTTTTCGACTATCGAAGAATTTAGGTTACACTGTGAAAGAGTTCACGACGACGCCGAAGGTGATACCATCGACACCTACGACACCTATCTCAAGCGCGAGTTTGGAAGCGCCGACGAAAATGAATCATCAAACAGACGATCTTTACCTCCCGAATTTCGTCAAAACGATGACGAAATGCGTGCCACAAAAAGACGTCGCACTCTTCACTTACCAGCTTCTAAGGATACCGGAAACACTTCGCGATCCAATATGGTTATTAACCCGCACGCTATTCGTAACATGAAATCATCAAACCCTTCGACGTGTCCCGATTGCGGAAAACATTATTCGTCCTACCACAACATGTTACGTCACTACAGGATAGCACACGACGCTTCTGGAAAAATTCTAACATGTTCTTACTGTTCCATGAAATTTAGACTTTTCTCTGAATTGAAAGATCACGAAACAGCCGAACACGCACAGGAAACCGAAGTCGAGCAAGATGCTGACGTTAAACCTCAAATATCTCCCGAACAAATGAACTTCTCTTGCCCCGATTGTGGAAAGTTATCCAAAACGATAAGCGACTGGAGAACTCACATGGAAACTCATCCGAAAAAGGTCTGTTCAGAATGCGATAAACAGTTCACTTTACAAAGTGAACTCGATCAGCACCGCAGCGTCCATTTGAATATTAAAGTTTACCGCGATTCCAAAACGCAAGATTACAAAAGCACCATGGTCAGTCCATCGGCTTTAATTTGCAAAATTTGCGACAAGACTTTCACCACGAAAAACGAATTAAGCGATCACAATTTGCTTCACGAAAGTATGCCCGTTTTGAGTGCACACAATGAGCAATCCGAGACGGAGGAGAAGCCGGAAGTCAATCGTAAATTTAGTTGTACACCATGCAACAAAAATTACGCTAGTTATGGCGGTATTTGGGATCATAATAAGAAGCACCACGGCGGTAAAAGCGTCGACAATGAATATCCTAAACAATGCACTTACTGCGAAAAAGTCATATCTTCGCGTTGCGGGTGGGTTAATCATCTTAGAATGCACGAACGTTTACATGAACAACCTAAACCGACTCCGGTGGAAACACGCCGACAGAGTAGAAGCAGCACCAATGACGACGGCGAGTCGTATTACACGTGCAAGAGATGTTTTAAAGTGTTTTCGAAAAAATACGATTACAAGAACCACATGAGGAGTCACGGGATTAATTTGTCTTCGAATACTTCAAACAGAAGTAGTACAAAAACTGGAAAGGTTATTAAGACTTACTGGTGCGATGTTTGTCATCAGGCTTGCCCCGGTTATGCCGAATTGCAAGAACACAAAAAAGAACATTTAGGCAAGAAAAATACGAAAGTGCTCCCGCAAGTGGTTAATCAAAAACAAAATGATTTTTCGTGTACTTTGTGCAACGTAACACTGAACAGTAATTTTGCTTTAATTCGTCACATGGAAAAACATCATACCAACAAAGACTCCAAATCGGTTTCGGTTTATTGCAAATTTTGTAAAATTCCATTCCAAGATATGGAAGAATTTAACGATCACATGGAGAAGGAACATGAAAAAGCACAAATAAAACAAATAAAACAGACCAACAATGATAAAAGCACCGGTAAACGCTTTACTTGCACAGTTTGTAAAAAATCGTTTGATAACGCTTCCGCCTTGGCGTCGCATCAAGGTTGGCATAAAAGAGGCAAGTTTGGCAAGAAGGTTTTGAATCCGAAAGCGAAAGGTTCCTCCAGAATAATTCAGATTCCGCCGATTGCAGTTTCAAATCCGTATCCTTGCCGAAGTTGCCCGAGAACGTTTGTAAACGAAACCGCCTTACAAATCCACATTTTGGAAACGCACAGAAATATTAACGCGACATTATTGTCGATGAATTGTAATAATTGTAAGATAAGTTTTGATTCTAAAGCTGCTTTCGATCGTCACATGCAATTACACGAAGTGGTCGAAAGCCAACGGCAACTTAAACCATATCCATGTCAATATTGCAATGCCGGATTTACCAGAAGTGATACTTTGAATGCTCATGTGAAACAACATCACAAAGAATTTTACAACGACATTTTTAAATGCACTTTCTGTGAACGAGTATTTGATAAGCAAAATGCACTTACTATTCATTTGAAAACCCACGATCGACAACGCTTGTCAGGTGAAATTGCATCAAAACCTAGTGGCAGTAAAAATGTTTACTTTTGTTCAATTTGCAAATTAGGTTTTGCTATTGCCAAAGATTTAAGACAACACGTCGTTACGGCTCATCCGTTTTGA
Protein Sequence: MPNNQDISNMGDLSINGMSSNEETEFEKIQFAAELRLQQRPISLNLMNNSENISSLTNVEVRYLEKAREIVKMAESLTCTCHKKTFPEYKDLFVHLENQRAWFAMLTCYNCLTTFGDKPTYLKHFCQCANDDLESLRRFVKEPVNPEIKIRLYQNFKCVKCNFTFGFHEDYCDHFNVKHIEFSQDNVLSCVCSEVFHNVENFKQHCYISCFLSHFCDVCFKDFSTIEEFRLHCERVHDDAEGDTIDTYDTYLKREFGSADENESSNRRSLPPEFRQNDDEMRATKRRRTLHLPASKDTGNTSRSNMVINPHAIRNMKSSNPSTCPDCGKHYSSYHNMLRHYRIAHDASGKILTCSYCSMKFRLFSELKDHETAEHAQETEVEQDADVKPQISPEQMNFSCPDCGKLSKTISDWRTHMETHPKKVCSECDKQFTLQSELDQHRSVHLNIKVYRDSKTQDYKSTMVSPSALICKICDKTFTTKNELSDHNLLHESMPVLSAHNEQSETEEKPEVNRKFSCTPCNKNYASYGGIWDHNKKHHGGKSVDNEYPKQCTYCEKVISSRCGWVNHLRMHERLHEQPKPTPVETRRQSRSSTNDDGESYYTCKRCFKVFSKKYDYKNHMRSHGINLSSNTSNRSSTKTGKVIKTYWCDVCHQACPGYAELQEHKKEHLGKKNTKVLPQVVNQKQNDFSCTLCNVTLNSNFALIRHMEKHHTNKDSKSVSVYCKFCKIPFQDMEEFNDHMEKEHEKAQIKQIKQTNNDKSTGKRFTCTVCKKSFDNASALASHQGWHKRGKFGKKVLNPKAKGSSRIIQIPPIAVSNPYPCRSCPRTFVNETALQIHILETHRNINATLLSMNCNNCKISFDSKAAFDRHMQLHEVVESQRQLKPYPCQYCNAGFTRSDTLNAHVKQHHKEFYNDIFKCTFCERVFDKQNALTIHLKTHDRQRLSGEIASKPSGSKNVYFCSICKLGFAIAKDLRQHVVTAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00927976;
90% Identity: iTF_00927976;
80% Identity: -