Lhir022890.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387387.1:3383972-3387842[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.7 57 5.1 7.8 1 23 52 74 52 74 0.98 2 18 0.0073 0.59 11.3 0.0 2 23 102 124 101 124 0.93 3 18 9.3 7.5e+02 1.6 0.2 2 23 147 169 146 169 0.94 4 18 5.3e-05 0.0042 18.1 0.7 1 23 174 197 174 197 0.95 5 18 0.0045 0.36 12.0 3.5 1 23 200 223 200 223 0.97 6 18 0.022 1.8 9.8 0.4 1 23 229 252 229 252 0.96 7 18 0.0014 0.11 13.6 1.6 2 23 260 282 259 282 0.95 8 18 0.55 44 5.4 0.3 1 23 287 309 287 309 0.94 9 18 1e-06 8.3e-05 23.5 2.7 1 23 315 337 315 337 0.98 10 18 0.00065 0.052 14.7 1.0 1 23 454 476 454 476 0.99 11 18 0.87 70 4.8 0.0 2 23 502 524 501 524 0.92 12 18 3 2.4e+02 3.1 0.8 2 23 547 569 546 569 0.81 13 18 0.0014 0.11 13.7 1.0 3 23 577 598 576 598 0.97 14 18 2.4e-05 0.0019 19.2 0.3 1 23 603 626 603 626 0.97 15 18 0.019 1.5 10.0 3.4 1 23 632 655 632 655 0.98 16 18 0.0011 0.085 14.0 0.8 2 23 662 684 661 684 0.95 17 18 0.021 1.7 9.9 2.2 1 23 690 712 690 712 0.95 18 18 0.016 1.3 10.3 1.1 1 23 718 741 718 741 0.84
Sequence Information
- Coding Sequence
- ATGTTGAGTTATCTTATCCACGTATCATTAATAGGCGAAACGAGGAGACAAATACAAAAAAGTAGCCTCGAACGCCTCACCACTGTCCGAAGAAACATTATCAGCGTGCTTCGCTTCTCTAGCGCCGTACCATTCAACTGGAATACCAAAGGTTTCCGATGCTTCTACTGCGCAAAATCTACCCAAGACTGTTGCCTACTCAAAGAACACACTCGCAAACATGCCCCTGTAGATCTCGATGAGTTTGTCAACAAACATATTATTACTAAAGATGTACCTGTCAAAATCGACATCACCAATCTCGAGTGTAAAGTTTGCGCTATTCCCTTTATTGATTTAGAAAATTTGATCACGCATATTATTGAAAATCATAAAGAAGAATACGACGCTACAGTAGGTGTATGTTTCTTTCCATTTATTTTGAACAAAGAAATTATGCAATGTGTTCTCTGCGAGAACAATTACGACAACTTTGCCAGTATGATTGGACATATGTATAAGCAACATATTAGCCATTCGTACATCTGTCAGATGTGCGGTCTCAGCTTTAAAGACCAAATCCGTTTAAAGAGACACATAACCAATAGTCACGTCGGCTACAGGTGCACCCTTTGCAAGAAAACTTTCAGCGCGTTGAATAAATTGGATAAACACAAACAGAGATTTCACGGACAGATGAAATTGTACGAATGTAGTTTATGCAGTGAGAAGTTCTTAAACAGTTACCAAGTCAAAGTTCATATGGGAAAAGTGCATAACGTTGAAAAGTATATGATAAAATGCGAACATTGTCCCAAGGTTTGCACGACGAAAGGGGCTATGTTGCTTCATGTACAAAGTCTGCATTCCGAGATCCGATATCAATGTGACTTGTGCGATTACACGGCTGGTATCAAGTGGCTAATTAAGCTACATAAACGGAAACACTTCGGACTGAAGGAGTATTCCTGTAGTATTTGTGAGCGACACTTCGGCAGGTCGAGTAATTTGAGGACTCATATGAAAGTGCACACGGGGGAATCTAGAGGTGGCCAGAAAGTCGTTGCAGCAAAACCAAAGACCGACATTCTCGTGAAGCCCAAATTAAGTACCGCCACTTTAGTGGGAAAGGCACCAAGAGCAGCTAATTTGGTGGCGGTTAAATCCAAAGCTTGCAAAGTCGAAACCTGCCCCCTACGACCACAAACGCAAAATTCATATGAAATCGTCGACAAAGACCTCGCGCCGCCAGTAAGCATCTTACAAAAGAAAGGCCCCAAGCGGCTGACAGCTAAAGAAAAACGTTCTATCATGATCAGGAATGTCACACAAGTCTTACTAAAGTCCACTGTCATGCCCTTCAGATGGCTTAAAAGTTCGTATCGCTGCTTTTACTGTTACGAAATCTTTCAAGAAGCTTCAGAACTCAAAGATCACCAGTCTACTCACAATGGGCAAGAGGTCATCGAAAAGGCTATGAACAATTATTGGGAACCAGTGGTTTATATCGACATCTCTGCCATGACTTGTAAACTCTGTCCCGAAGAAATAACAGATCTGTATGAAATGATCGATCATTTGATAGCGAAACATGGTGTAATTTTCAATAAAGATATAGGTATGTGCATGGTCGCATTCAAGTTAGATAATCTTGATCTTTCGTGTTTGATTTGTGGAGCGACATTTTTTACTTTCGGTCCTCTGCTTTGCCACACAAATAAAGCACACAAAGGAACCAACATCCTTCTCTGCGATGTGTGTGGACAACACTTCAAAGACACAAATCTTTTACGATTGCACGTGAAATCTGTGCACGAAAATGCAAGCTTCCCATGCCCGGATTGTGGCGAAAAATTCCTCTCTCCGTCGAAGTTAAAGACACATCAGAAAATTCAACATTTCGTTGAAAAGAAGTACAAGTGCCTAGTCTGCACAGAAACTTTCCAGAGCCATTACAAGAGGTCCAGGCATATGGCTACTGAGCATGAGAACAGGAAAGTTATCAAGTGTCTCCAATGCCCTAAAACTTTCATATTTAGGAGTATGATGATGACGCATTTGCGAGACAGTCACTTGAAAGTCCGTAACCATATGTGCAGCGTTTGCGGCTGGAGGGCTTTCAACAGCAACCGATTAAAGAACCATATGTATAAACACAGTGGTGAGAAGAACTTCAAATGCGAAGTGTGCGAGAAAGCCTTCTCGACGAGGAAGATCATGATGTCGCATTTTTCGAGAATGCACAAAACCCCTCAGCAACCTGTCGCATCTTACGGCAATCCTTATGCACAGTAA
- Protein Sequence
- MLSYLIHVSLIGETRRQIQKSSLERLTTVRRNIISVLRFSSAVPFNWNTKGFRCFYCAKSTQDCCLLKEHTRKHAPVDLDEFVNKHIITKDVPVKIDITNLECKVCAIPFIDLENLITHIIENHKEEYDATVGVCFFPFILNKEIMQCVLCENNYDNFASMIGHMYKQHISHSYICQMCGLSFKDQIRLKRHITNSHVGYRCTLCKKTFSALNKLDKHKQRFHGQMKLYECSLCSEKFLNSYQVKVHMGKVHNVEKYMIKCEHCPKVCTTKGAMLLHVQSLHSEIRYQCDLCDYTAGIKWLIKLHKRKHFGLKEYSCSICERHFGRSSNLRTHMKVHTGESRGGQKVVAAKPKTDILVKPKLSTATLVGKAPRAANLVAVKSKACKVETCPLRPQTQNSYEIVDKDLAPPVSILQKKGPKRLTAKEKRSIMIRNVTQVLLKSTVMPFRWLKSSYRCFYCYEIFQEASELKDHQSTHNGQEVIEKAMNNYWEPVVYIDISAMTCKLCPEEITDLYEMIDHLIAKHGVIFNKDIGMCMVAFKLDNLDLSCLICGATFFTFGPLLCHTNKAHKGTNILLCDVCGQHFKDTNLLRLHVKSVHENASFPCPDCGEKFLSPSKLKTHQKIQHFVEKKYKCLVCTETFQSHYKRSRHMATEHENRKVIKCLQCPKTFIFRSMMMTHLRDSHLKVRNHMCSVCGWRAFNSNRLKNHMYKHSGEKNFKCEVCEKAFSTRKIMMSHFSRMHKTPQQPVASYGNPYAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00033158; iTF_00143256; iTF_00206363; iTF_00207226;
- 90% Identity
- -
- 80% Identity
- -