Ahis012353.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- -
- Assembly
- GCA_947579745.1
- Location
- OX388172.1:1248907-1252500[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.099 6.3 7.7 4.7 1 23 40 62 40 62 0.98 2 16 0.098 6.2 7.7 0.0 3 22 91 110 89 112 0.88 3 16 4.5e-05 0.0028 18.2 0.9 1 23 162 185 162 185 0.95 4 16 0.0012 0.074 13.8 5.1 1 23 188 211 188 211 0.97 5 16 0.0016 0.1 13.3 0.6 1 23 217 240 217 240 0.96 6 16 0.0015 0.092 13.5 1.6 2 23 248 270 247 270 0.96 7 16 1.3 84 4.1 0.3 1 23 275 297 275 297 0.87 8 16 5.1e-07 3.2e-05 24.3 1.1 1 23 303 325 303 325 0.98 9 16 0.00053 0.033 14.8 0.6 1 23 451 473 451 473 0.99 10 16 0.83 52 4.8 0.0 2 22 499 519 498 521 0.88 11 16 0.0039 0.25 12.1 2.8 3 23 574 595 573 595 0.97 12 16 7e-06 0.00044 20.8 0.4 1 23 600 623 600 623 0.98 13 16 0.018 1.1 10.0 3.4 1 23 629 652 629 652 0.98 14 16 0.0024 0.15 12.8 0.8 2 23 659 681 658 681 0.95 15 16 0.0038 0.24 12.2 1.1 1 23 687 709 687 709 0.96 16 16 0.0024 0.15 12.8 0.5 1 23 715 738 715 738 0.84
Sequence Information
- Coding Sequence
- GTAACGAAGAGACAAATACAAAAGAGTAACCTTGATCGCCTGAGCACAGTCCGGAGAAACATTAGCACCGTGCTGCGCTTCTCTAACGCCGTACCCTTCAACTGGAATACCAAAGGGTTCCGATGCTTCTACTGCGCAAAGTCTACCCAAGACTGCTACCTACTCAAAGAACACACTCTTAAACACATCTCTGTAGATCTCGATGACTTTATCACCAAACACATCATTACTAAAGATATCCCTATCAAAATTGACATAACTGACCTCGCGTGTAAAGTTTGCGCTATCCCGTTTCCCAATTTAGAAAATTTAATCATGCATGTTGTAGAAAATCATAACGAAAAATACGACCGATCGGCTGGAGTATGTTGTTTTCCGTTTGTCTTGAATAAAGAAGCAATGGAATGCGTCCTGTGCGAAAACAATTATGACAATTTTGCCAGCATGATCGGTCATATGTATAAACAGCATATCAGCCATTCATACATGTGCCAGATGTGCGGCCTCAGCTTCAAAGACCAGATTCGTTTAAAGAGGCACATAACAAACAGTCACGTAGGATACAAATGCACAATTTGCAAAAAAACTTTCAGCGCAATGCACAAACTGGCTAAGCATAAACAACGGTTTCACGGACAGGTGAAACTGTACGAATGCAGCTTGTGCAGCGAGAAATTTTTAAACAGTTATCAACTTAAAGTACACATGGGGAAGGTACACAACGTTGAAAAGTACTTGGTTAAGTGCGAGCATTGCCCTAAAGTTTGCACGACGAAAGGGGCGATGTTACTTCATGTGCAGAGTCTTCATTCTGAGATCAGGTATCAATGTGACTTATGCGATTATACGGCCGGTATAAAGTGGCTGATTAAGCTTCATAATCGGAAGCATTTGGGGTTGAAAGAGTACTCGTGTAGCATTTGCGAGCGACAATTCGGCAGGTCCAGTAATCTTAGGACACACATGAAAGTGCACACGGGAGAACCTAGAGGTGGCCAGAAAATCGTTGCAGCAAAACCAAAAACTGGCACTCTCGTGGCTTCTAAATCAAAAACCGGCTCTCTTGTAGCGGCTAAATCAAAAACTAGCACTCTTCTAGCGGCCAAATCAAAGGCCAGCAACCTCGGTGCGGCTAAGCTCAAAGCCTGCAAGCTCAGAAGCAACGTACTACCAAAAGCCCATAGCTCATCTGAGATCATTGACAGAGATCTGGCGCCTCCGGTCAACATCTTGCCAAAAAAAGGACCTAAGCGTCTTTCAGCCAAAGAAAAACGTAACATAATGATCCGGAATGTTACCCAAGTGTTATTAAAAACTACTGTCATGCCTTTTAGATGGCTTAAAAGTTCGTACCGGTGCTTTTACTGCTACGAAATCTTTCAAGAAGCCTCAGACCTCAAAGATCATCAGGCTACCCATAAAGGACAGGAGGTTATAGAGAAAGCGATGAACAATTATTGGGAGCCAGTCGTTTATCTGGACATATCGGAAATGACCTGCAAACTCTGTCCTGAAGTAATTACAGATCTCTATGACATGGTAGACCACTTAGTAGCGAAACACGGTGTGAATTTCAACAAAGATATTGGCATGTGTATGGTTGCGTTCAAGTTGGACAATCTCGATATCACCTGCTTGAGTTGTGGAGCAGCCTTCTTTACGTTTGGACCTCTTCTTTGCCATACCAATAAGGCACATAAGGGCACGAACGTACTTCTTTGCGAGGTTTGCGGACAGCACTTTAAACACACCAATCTCTTAAGATTACACGTGAAATCTGTTCATGAAAACGCTAGCTATCCGTGTCCCGATTGTGGCGAAAAATTTCTCTCGCCGTCGAAGTTAAAAACCCATCAGAAAACTCAGCATTTCGTGGAAAAGAAGTACAAATGCCTTGTCTGTACCGAGACGTTCCAGAGCCATTACAAGCGATCCAGGCACATGGCGACAGAGCACGAAAACAGGAAAGTAATCAAATGTCTCCAATGTCCGAGAACCTTCATTTTCAGAAGTATGATGATGACTCATTTGCGAGACACCCATCTGAAAGTTCGAAACTTTATGTGCAGCATTTGCGGCTGGAGAGCGTTCAACAGCAACAGGTTAAAGAACCACATGTTCAAGCATACTGGAGAGAAGAATTTCAAATGCGAAGTGTGTGACAAAGCTTTCTCGACGAGGAAAATTATGATGGCGCATTTCGCGAGGATGCACAAAGCTCCTCAGCAACCAGTCGCATCTTATGGAAATCCTTATGGACAACAATAA
- Protein Sequence
- VTKRQIQKSNLDRLSTVRRNISTVLRFSNAVPFNWNTKGFRCFYCAKSTQDCYLLKEHTLKHISVDLDDFITKHIITKDIPIKIDITDLACKVCAIPFPNLENLIMHVVENHNEKYDRSAGVCCFPFVLNKEAMECVLCENNYDNFASMIGHMYKQHISHSYMCQMCGLSFKDQIRLKRHITNSHVGYKCTICKKTFSAMHKLAKHKQRFHGQVKLYECSLCSEKFLNSYQLKVHMGKVHNVEKYLVKCEHCPKVCTTKGAMLLHVQSLHSEIRYQCDLCDYTAGIKWLIKLHNRKHLGLKEYSCSICERQFGRSSNLRTHMKVHTGEPRGGQKIVAAKPKTGTLVASKSKTGSLVAAKSKTSTLLAAKSKASNLGAAKLKACKLRSNVLPKAHSSSEIIDRDLAPPVNILPKKGPKRLSAKEKRNIMIRNVTQVLLKTTVMPFRWLKSSYRCFYCYEIFQEASDLKDHQATHKGQEVIEKAMNNYWEPVVYLDISEMTCKLCPEVITDLYDMVDHLVAKHGVNFNKDIGMCMVAFKLDNLDITCLSCGAAFFTFGPLLCHTNKAHKGTNVLLCEVCGQHFKHTNLLRLHVKSVHENASYPCPDCGEKFLSPSKLKTHQKTQHFVEKKYKCLVCTETFQSHYKRSRHMATEHENRKVIKCLQCPRTFIFRSMMMTHLRDTHLKVRNFMCSICGWRAFNSNRLKNHMFKHTGEKNFKCEVCDKAFSTRKIMMAHFARMHKAPQQPVASYGNPYGQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00926846;
- 90% Identity
- -
- 80% Identity
- -