Aleu024184.2
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- -
- Assembly
- GCA_949125355.1
- Location
- OX421288.1:3648839-3651939[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.65 48 5.3 4.9 1 23 77 99 77 99 0.98 2 16 0.066 4.8 8.5 0.0 3 21 128 146 126 149 0.88 3 16 6.1e-05 0.0044 18.0 0.7 1 23 199 222 199 222 0.95 4 16 0.0088 0.64 11.2 5.0 1 23 225 248 225 248 0.97 5 16 0.096 7 8.0 1.2 1 23 254 277 254 277 0.95 6 16 0.00027 0.02 16.0 2.0 2 23 285 307 284 307 0.96 7 16 0.64 46 5.4 0.3 1 23 312 334 312 334 0.94 8 16 6.2e-07 4.6e-05 24.3 1.1 1 23 340 362 340 362 0.98 9 16 0.00074 0.054 14.6 0.5 1 23 479 501 479 501 0.98 10 16 0.78 57 5.1 0.0 2 23 527 549 526 549 0.94 11 16 0.0048 0.35 12.0 2.8 3 23 602 623 601 623 0.97 12 16 2.9e-05 0.0021 19.1 0.9 1 23 628 651 628 651 0.98 13 16 0.022 1.6 10.0 3.4 1 23 657 680 657 680 0.98 14 16 0.0013 0.093 13.9 0.9 2 23 687 709 686 709 0.95 15 16 0.032 2.3 9.5 2.3 1 23 715 737 715 737 0.95 16 16 0.0066 0.48 11.6 0.6 1 17 743 759 743 766 0.79
Sequence Information
- Coding Sequence
- atgggcaagcgttatgcttactatcaggcaaacGATTTATTCATCTCGTTACTCAATTGCATAAAACGCCCAGATAAGGTATGCGTAAACTCGAATACTCTCTTTGCAGGGGTAACGAagaagcaaatacaaaaaagtaactTCGATCGCCTGACCACTGTCCGAAGAAACATTAGCACGGTGCTTCGCTTCTCTAACGCTGTCCCCTTCAACTGGAATACCAAAGGCTTCCGATGCTTCTTCTGCGCAAAATCTACCCAAGACTGTTACCTCCTCAAAGATCACACCCTCAAACACTCCGCGGTAGACCTCGATGACTTTATCACCAAACACATCATCACTAAAGATGTCCCCATCAAAATCGACATCACTAATCTTGCTTGTAAAGTTTGCGCAATCCCATTCACCAATTTAGAAGAATTGATCACTCATGTAGTCGGAAATCATAGTGAAGAATATGATGCTTCAGCCGGAGTATGTTTTTTCCCGTTCGTtttaaacaaagaaataatacaatgtGTTTTATGCCAGAACAATTACGACAATTTCGCCAGCATAGTCGGCCATATGTATAAGGTACATATTAGCCATTCTTACATCTGTCAGATGTGCGGCCTCAGCTTCAAAGACCAGATTCGTTTAAAAAGGCACATTACCAACAGTCACGTTGGATACAAATGCACAGTTTGCAAGAAAACTTTCAGCGCTATGCACAGATTGGCAAAACACAAGCAAAGGTTTCACGGACTGGTGAAATTGCACGAATGTAGTTTGTGCAGTGAGAAGTTTTTGAACAATTACCAAGTTAAAGTCCATATGGGGAAAGTTCATAACGTTGAAAAGTATATGATCAAGTGCGAACATTGTCCTAAAGTTTGCACGACGAAAGGGGCTATGTTACTTCATATGCAAAGTCTTCATTCGGAGATCAGATACCAATGCGACTTATGTGATTACACGGCTGGTATCAAGTGGCTGATCAAGCTTCATAAACGGAAGCATTTTGGGCTAAAAGAGTATTCGTGTAGCATTTGCGAACGGCAGTTTGGCAGGTCCAGTAATTTGAGGACCCATATGAAAGTGCACACGGGAGAACCTAAAGGTGGCCAGAAACTGGTTGCAGCTAAACCAAAAGCTGGCAATCTCGTGGCGCCTAAACGAAAAGCTGGCACTCTCGTGGCGGTAAAACCAAAAACTGCCCCTATCGTAGCGACTAAGCCCAAAGCCTGCAAACTCAGGAGCACCACCTTACTCCCTAAAGCCCATAGCTCATCTGAAATCATTGACAGAGATCTGGCGCCTCCGGTCagcatattgcaaaaaaaaggcCCAAAACGACTAACACCCAAAGAGAAACGGAACATCATGATACGAAACGTCACCCAAGTCTTATTAAAAACCACTGTCATGCCTTTTAGGTGGCTTAAAAGTTCGTACCGGTGCTTCTACTGCTACGAAATCTTCCAAGAAGCCTCAGACCTCAAAAATCATCAGGCTATCCATAATGGACAAGAGGTTATAGAGAAAGCGATGAATAATTACTGGGAGCCAGTAGTTTATCTCGATATATCGGAAATGACGTGCAAACTCTGTCCTGCGGTGATTACGGATCTTTACGACATGGTAGACCATTTGATAGTGAATCACGGTGTGAATTTCAACAAAGATATAGGCATGTGTATGGTTGCATTCAAGCTGGATAATCTTGATCTTTCGTGCTTGAGCTGTGGAGTATCCTTCTTTACTTTTGGACCACTGCTTTGCCACACCAATAAAGCACATAAAGGTACGAATGTGCTCCTTTGCGAAGTGTGCGGACAACACTTCAAACACACGAATCTCTTACGTTTACACGTCAAGTCGGTCCATGAGAACGCTAGCTTTTCATGTCCCGATTGTGACGAGAAATTTCTCTCGCCATCAAAGTTGAAAACCCATCAGAAAACTCAGCATTTCGTGGAGAAGAAGTACAAATGTCTGGTCTGTACGGAGACGTTTCAGAGCCACTACAAGCGGTCCAGGCACATGGCGACCGAGCACGAAAACAGGAAAGTAATCAAGTGTCTGCAATGTCCGAAGACCTTTATCTTCCGGAGTATGATGATGACTCATCTGAGAGATACTCATCTCAAAGTGAGAAACCATATGTGCAGCGTTTGCGGATGGAGAGCATTCAATAGTAATAGACTAAAAAATCACATGTTCAAGCATAGTGGTGAAAAGAACTTCAAATGCGAGGTGTGTGATAAAGCTTTCTCGACGAATAAGATAATGAAGGGGCATTTTGCGAGGATGCACAAACCTCTCCAGCAACCTGTCGTATCTTACGGCAATCTTTATGGACAACAATGA
- Protein Sequence
- MGKRYAYYQANDLFISLLNCIKRPDKVCVNSNTLFAGVTKKQIQKSNFDRLTTVRRNISTVLRFSNAVPFNWNTKGFRCFFCAKSTQDCYLLKDHTLKHSAVDLDDFITKHIITKDVPIKIDITNLACKVCAIPFTNLEELITHVVGNHSEEYDASAGVCFFPFVLNKEIIQCVLCQNNYDNFASIVGHMYKVHISHSYICQMCGLSFKDQIRLKRHITNSHVGYKCTVCKKTFSAMHRLAKHKQRFHGLVKLHECSLCSEKFLNNYQVKVHMGKVHNVEKYMIKCEHCPKVCTTKGAMLLHMQSLHSEIRYQCDLCDYTAGIKWLIKLHKRKHFGLKEYSCSICERQFGRSSNLRTHMKVHTGEPKGGQKLVAAKPKAGNLVAPKRKAGTLVAVKPKTAPIVATKPKACKLRSTTLLPKAHSSSEIIDRDLAPPVSILQKKGPKRLTPKEKRNIMIRNVTQVLLKTTVMPFRWLKSSYRCFYCYEIFQEASDLKNHQAIHNGQEVIEKAMNNYWEPVVYLDISEMTCKLCPAVITDLYDMVDHLIVNHGVNFNKDIGMCMVAFKLDNLDLSCLSCGVSFFTFGPLLCHTNKAHKGTNVLLCEVCGQHFKHTNLLRLHVKSVHENASFSCPDCDEKFLSPSKLKTHQKTQHFVEKKYKCLVCTETFQSHYKRSRHMATEHENRKVIKCLQCPKTFIFRSMMMTHLRDTHLKVRNHMCSVCGWRAFNSNRLKNHMFKHSGEKNFKCEVCDKAFSTNKIMKGHFARMHKPLQQPVVSYGNLYGQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00926846;
- 90% Identity
- -
- 80% Identity
- -