Lhir000588.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387386.1:10803967-10805910[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-13 1.3e-10 41.5 0.0 3 41 17 55 15 57 0.95
Sequence Information
- Coding Sequence
- ATGCCAAGTACATACAAACGGAAGACACAGCAACAGACATGGAACTCGGAATCAATGGAAAAAGCTATAAGAGCTGTAAGAAACGAAGAAATGGGCTACCTCAAGgctagcaaagaattcgaagttcctcgatcgacgctcaaaagacgtgtaaaaggaataaataaagaagctgttgaaaataaaaaactattggggtcttgccgtccaacttttagtccggagcaagaacaagaattggtgcatcacattttagaaatggaaaagcgattttacggattaactttacaagatgtacggagactggcttatcagttggctgaacgcaataatatagaacacaagtttaataaagaaactgaaatggctggaaaagcatggacttctgcttttagaaaacgtcatccggaactgacactaagaagccctgaagcaacctcacttgctcgagcacagggctttaataaagtaagtgtcacaaaattttttgaccttctagaagaggttaggtctaaaacaagctacccacctcatcgtattttcaatgttgatgagactggctttacgacagtgcagagtaagagctctaaaatattggcgcaaaagggaaagaagcaggttggcgctatcacctcagcagagcgaggtatattaagcactgttgtaatttgtatggcagctggtggaaactacattcccccttttattatttttccccggaaaagaatgaaggtggaacttcaagatggggcaccaccaggtacaggatttgcttgtcattcatcagggtggatgcagttggacatttttacaaaatggtttgaacatttcctcaaattcgccaagccaactgaagatgatccagctctccttattcttgatgggcataatacgcacaccaaaaatttggattttattgacttggcaagaaaaaatcacaccactgtcttgtgtttgccgccacactgcagtcacaggcttcaaccactagatgtgtctttcatggggcctgtgaacaaatactacatccgcgcagttgagaagtatcttcgcaataacccaggaagagcaataactgtcttccaattcagcaaactctttggcgaagcttacagtgaggcagcccaacagtctattgcagtcaatggttttcgtaaatgtggaatagagccaatagatcgccacgtctttaaagatcatgactttttggctgcagacacaacagatgtggTTCTTGCTGAACCGGAAACACAACAGAATGAGGCCAACGAAGAAAATGAGACACCTGATAGACGAGCAGAAACAACAGATGTGGTCCTGGCTGAAACGGAAACACAACAGTATGATGCCAGCAAAGAGGATGAGACACTTGATAGAGGAGAGTCTTCATCAATTCTACAGGATACCCAAGAGGAAACACTAGCAATGACACCACCAATGTTAGATACGCAAGCAAGCACATTAATGTCGCCATTATTAGATTGGCAACCGGGCACATTAACCTCACCAATTTTAGCTCCACAACCAAGCACATCTTTCGCAGTAACGCCTAAAGACTTGTTTCCGATTCCCAAAGCATTGCATAGAACAAAAAAAGTTAACAGAAAGAGGGGTTgcacagcaattttaactagcagtccgtataaaaatgagttagaagaagaaaaaacacaacagaaacagaagaaggcgccaaaaagagtttctaaaCTTGCTATTGTTTCAAAAAAAAGTGCTAAGAAATCTAAAATTAAGAAATGCGCCCAAACTAATGACGATGATGAGGATGACGACTCTGAATGTTTTTACTGCGGCGAAACTTGGTCCAAGTCAAAACATGATGATGGCTGGATACGGTGTTCTGTCTGCAAAAGGTGGGCCCATGAAGCATGCTCGGGCTGTGATGACTTAGACAACGACTTTCTTTGTGAATTTTGTTCCTAA
- Protein Sequence
- MPSTYKRKTQQQTWNSESMEKAIRAVRNEEMGYLKASKEFEVPRSTLKRRVKGINKEAVENKKLLGSCRPTFSPEQEQELVHHILEMEKRFYGLTLQDVRRLAYQLAERNNIEHKFNKETEMAGKAWTSAFRKRHPELTLRSPEATSLARAQGFNKVSVTKFFDLLEEVRSKTSYPPHRIFNVDETGFTTVQSKSSKILAQKGKKQVGAITSAERGILSTVVICMAAGGNYIPPFIIFPRKRMKVELQDGAPPGTGFACHSSGWMQLDIFTKWFEHFLKFAKPTEDDPALLILDGHNTHTKNLDFIDLARKNHTTVLCLPPHCSHRLQPLDVSFMGPVNKYYIRAVEKYLRNNPGRAITVFQFSKLFGEAYSEAAQQSIAVNGFRKCGIEPIDRHVFKDHDFLAADTTDVVLAEPETQQNEANEENETPDRRAETTDVVLAETETQQYDASKEDETLDRGESSSILQDTQEETLAMTPPMLDTQASTLMSPLLDWQPGTLTSPILAPQPSTSFAVTPKDLFPIPKALHRTKKVNRKRGCTAILTSSPYKNELEEEKTQQKQKKAPKRVSKLAIVSKKSAKKSKIKKCAQTNDDDEDDDSECFYCGETWSKSKHDDGWIRCSVCKRWAHEACSGCDDLDNDFLCEFCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709130;
- 90% Identity
- iTF_00926525; iTF_00926526; iTF_00926527; iTF_00709123; iTF_00709124; iTF_00709125; iTF_00709126; iTF_00709127; iTF_00709128; iTF_00709129; iTF_00634259;
- 80% Identity
- iTF_00926525; iTF_00926526; iTF_00926527;