Lhir013734.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- retn
- Assembly
- GCA_947563715.1
- Location
- OX387384.1:12943216-12954021[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-20 3.6e-17 63.2 0.0 15 89 12 84 3 84 0.95 2 2 5.1 1.6e+04 -3.0 0.0 25 38 218 231 179 232 0.66
Sequence Information
- Coding Sequence
- ATGCAGTTTCTTTGGCACAATCCGATCCCAGTACAGCAAGGTACCCCAATAAACCGGCTGCCGATTATGGCCAAGTCCGTGCTGGACCTGTACGAGCTGTACAACCTGGTGATAGCGCGCGGCGGCCTCGTCGAGGTCATCAACAAGAAGCTCTGGCAGGAGATCATTAAGGGGCTGCGGCTTCCGTCTTCCATCACATCCGCTGCCTTCACGTTACGAACACAATACATGAAGTACCTGTATGACTACGAGTGCGAGAAGAAGAACTTGTCCACACGGAGCGAGCTGGACGCCGCCATTGAAGGGAACAAGCGTGAGGGGAGACGCGCCTCAGGACAGTACGACGCGCAAGCGGCGCTCGCCATGCCGCCCCTGAACCGCGGTGTGCCGGCGTCTCTTGCGCAGCTCTCGCAACACATGCAGCCGCTCTCTCTGTCACTCGGCGGGGGGGTGGGGGGTGTGCCGCGGCTGCCCCCGCTGCCCCCGCACGCCCCTCATATCAGCCAGCACGATATAGAGTACAGAGTCCGCGAGTATATGAAGATGATACAGACGCAACGGGAGCTTATGAGAAATGGGTCTGAATCCCCACCGAGCGCGACGAACGGCCCCACTCCCATGATGTCACCCCGCGACGCTGCCGCTCTGAGCGCGATCGACGTGTCGCGCCTCACGCTGTGGTCTCTATACAACAACAATAACAACAACAGTCCAGCGCCCACTGACCTCGAGCCACAACGAGAGGCGCTAAACCTGAGCGAGAGTCCGAACTCGAGCAGCAGTATCAAGCGCGAGGCATGCCGCTCGCCCCCGCCGCCCGCGAAGCGCCGCACGCCGCGCCCGCCCTCGCCGCGTCTCCCCTCGCCGCCGAGGCAGGCGTGCGCGCCGCCGCCTGCGCCTGCGCAACTCAACGGCTCGCAGAACGGAGTCAATGGAGCAGCTTTCAAGATCACCACCAGAGGTGATGCCAACACAGGAGACCAACAACTAGTCGTCTCAATAGAACTGAACGGCGTTACATACGAAGGCGTCTTATTCCCCTCACAAAACGGCAACGGACAAAATGGCCACCGGCAAATGGTCTCTTAA
- Protein Sequence
- MQFLWHNPIPVQQGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRGVPASLAQLSQHMQPLSLSLGGGVGGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQTQRELMRNGSESPPSATNGPTPMMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPAPTDLEPQREALNLSESPNSSSSIKREACRSPPPPAKRRTPRPPSPRLPSPPRQACAPPPAPAQLNGSQNGVNGAAFKITTRGDANTGDQQLVVSIELNGVTYEGVLFPSQNGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00142878;
- 90% Identity
- iTF_00638435;
- 80% Identity
- -