Lhir023610.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387387.1:16529569-16530838[+]
Transcription Factor Domain
- TF Family
- bHLH
- Domain
- HLH domain
- PFAM
- PF00010
- TF Group
- Basic Domians group
- Description
- A basic helix-loop-helix (bHLH) is a protein structural motif that characterizes one of the largest families of dimerizing transcription factors.It should not be confused with the helix-turn-helix domain.The motif is characterized by two α-helices connected by a loop. In general, transcription factors including this domain are dimeric, each with one helix containing basic amino acid residues that facilitate DNA binding. In general, one helix is smaller, and, due to the flexibility of the loop, allows dimerization by folding and packing against another helix. The larger helix typically contains the DNA-binding regions. bHLH proteins typically bind to a consensus sequence called an E-box, CANNTG. The canonical E-box is CACGTG (palindromic), however some bHLH transcription factors, notably those of the bHLH-PAS family, bind to related non-palindromic sequences, which are similar to the E-box. bHLH TFs may homodimerize or heterodimerize with other bHLH TFs and form a large variety of dimers, each one with specific functions.https://en.wikipedia.org/wiki/Basic_helix-loop-helix
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.068 33 5.0 0.2 29 49 19 39 2 43 0.80 2 15 0.08 39 4.8 0.2 30 49 41 60 36 64 0.74 3 15 0.034 17 6.0 0.9 20 49 50 81 48 85 0.72 4 15 0.13 65 4.1 4.2 30 49 83 102 69 127 0.56 5 15 0.037 18 5.8 0.8 20 46 113 141 111 148 0.72 6 15 0.14 69 4.0 3.7 37 46 153 162 132 190 0.54 7 15 0.035 17 5.9 0.7 20 46 176 204 174 211 0.72 8 15 0.036 18 5.9 0.7 20 46 197 225 195 232 0.72 9 15 0.12 59 4.2 0.2 30 45 230 245 222 253 0.79 10 15 0.059 29 5.2 0.4 20 46 239 267 237 274 0.70 11 15 0.018 8.9 6.9 0.5 20 47 260 289 258 295 0.72 12 15 0.15 71 4.0 0.4 30 49 293 312 288 316 0.74 13 15 0.11 53 4.4 0.3 32 46 316 330 309 337 0.75 14 15 0.035 17 5.9 0.7 20 46 323 351 321 358 0.72 15 15 0.044 22 5.6 0.2 30 50 356 376 351 379 0.74
Sequence Information
- Coding Sequence
- ATGGAAAGGGACAGATCGCAAACTCAAAAAGATAGGCACATCGCGTTGCTCGTCTCGAGCCTGAATATCGCGAAGCTGAGCAAATACGAGACTCTCAAGCACATCGCGTTGCTCGTCTCGAGCCTGAATATCGCAAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAGCCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAGCCTGAATGTCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAGCCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAGCCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACTCTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCAAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACTCTCAAGCACATCGCGTGGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAACACGAGACACTCAGGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAACACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAAACTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACTCTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAACACGAGACACTCAGGCACATCGCGTTGCTCGTCTCGAGCCTGAATATCGTGAATCGGAGCAAATAA
- Protein Sequence
- MERDRSQTQKDRHIALLVSSLNIAKLSKYETLKHIALLVSSLNIAKLSKYETLKHIALLVSSLNIAKLSKYETLKHIALLVSSLNVAKLSKYETLKHIALLVSSLNIAKLSKYETLKHIALLVSSLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIAWLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKHETLRHIALLVSNLNIAKLSKHETLKHIALLVSKLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKHETLRHIALLVSSLNIVNRSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00926311;
- 90% Identity
- iTF_00926311;
- 80% Identity
- -