Lhir005891.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387377.1:7297578-7304326[-]
Transcription Factor Domain
- TF Family
- bHLH
- Domain
- HLH domain
- PFAM
- PF00010
- TF Group
- Basic Domians group
- Description
- A basic helix-loop-helix (bHLH) is a protein structural motif that characterizes one of the largest families of dimerizing transcription factors.It should not be confused with the helix-turn-helix domain.The motif is characterized by two α-helices connected by a loop. In general, transcription factors including this domain are dimeric, each with one helix containing basic amino acid residues that facilitate DNA binding. In general, one helix is smaller, and, due to the flexibility of the loop, allows dimerization by folding and packing against another helix. The larger helix typically contains the DNA-binding regions. bHLH proteins typically bind to a consensus sequence called an E-box, CANNTG. The canonical E-box is CACGTG (palindromic), however some bHLH transcription factors, notably those of the bHLH-PAS family, bind to related non-palindromic sequences, which are similar to the E-box. bHLH TFs may homodimerize or heterodimerize with other bHLH TFs and form a large variety of dimers, each one with specific functions.https://en.wikipedia.org/wiki/Basic_helix-loop-helix
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0048 2.4 8.7 0.6 19 50 5 36 2 39 0.83 2 16 0.07 34 5.0 0.2 30 49 58 77 50 81 0.75 3 16 0.033 16 6.0 0.9 20 49 67 98 65 102 0.72 4 16 0.021 11 6.6 0.8 20 49 88 119 86 123 0.73 5 16 0.036 18 5.9 0.8 20 46 109 137 107 144 0.72 6 16 0.09 44 4.6 0.1 30 46 142 158 137 165 0.75 7 16 0.096 47 4.5 0.4 30 46 163 179 155 186 0.76 8 16 0.037 18 5.8 0.8 20 46 172 200 170 207 0.72 9 16 0.034 17 6.0 0.6 20 46 193 221 191 228 0.72 10 16 0.04 19 5.8 0.4 20 45 214 241 212 249 0.74 11 16 0.059 29 5.2 0.4 20 46 235 263 233 270 0.70 12 16 0.018 8.8 6.9 0.6 20 47 256 285 254 291 0.72 13 16 0.046 23 5.6 0.2 30 50 289 309 284 312 0.74 14 16 0.11 52 4.4 0.3 32 46 312 326 305 333 0.75 15 16 0.091 45 4.6 0.2 30 46 331 347 326 354 0.75 16 16 0.018 8.6 6.9 0.7 20 50 340 372 338 375 0.72
Sequence Information
- Coding Sequence
- ATGGTGAGCAAAAAGATACAGCAGCTCATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAACACGAGACACTCAGGCACATCGCGTTGCTCGTCTCAAGCCTGAATATCGCGAAGCTGAGCAAATACGAGACTCACAAGCACATCGCGTTGCTCGTCTCGAGCCTGAATATCGCAAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAGCCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCATTGCTCGTCTCGAGCCTGAATGTCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAGCCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACTCTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACTCTCAAGCACATCGCGTGGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAACACGAGACACTCAGGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAACACGAGACACTCAGGCACATCGCGTTGCTCGTCTCGAAACTGAATATCGCGAAGCTGAGCAAATACGAGACACTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAATACGAGACTCTCAAGCACATCGCGTTGCTCGTCTCGAACCTGAATATCGCGAAGCTGAGCAAACACGAGACACTCAGGCACATCGCGTTGCTCGTCTCGAGCCTGAATATCGTGAATCGGAGCAAATAA
- Protein Sequence
- MVSKKIQQLIALLVSNLNIAKLSKHETLRHIALLVSSLNIAKLSKYETHKHIALLVSSLNIAKLSKYETLKHIALLVSSLNIAKLSKYETLKHIALLVSSLNVAKLSKYETLKHIALLVSSLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIAWLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKHETLRHIALLVSNLNIAKLSKHETLRHIALLVSKLNIAKLSKYETLKHIALLVSNLNIAKLSKYETLKHIALLVSNLNIAKLSKHETLRHIALLVSSLNIVNRSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00926314;
- 90% Identity
- iTF_00926314;
- 80% Identity
- -