Lnic036904.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979691.1:1444501-1466874[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-09 9.6e-07 29.6 0.1 4 42 216 254 215 256 0.92
Sequence Information
- Coding Sequence
- ATGAAGGAAGTTAACATAAACATTGAAGGCTATAATGTTAACGGGATATGTGTCGGCTGTTTAAACTACAATCGTCAAATGTTTTACCACCCCTTCGTCAAAGAATGTTTTCGTTTGCTCGGAAATATCGATGTGCCAGATGGTCTGGAAGTCCAGGTGTGTTGGGAATGCCTGGCGCGCGTCAAATCTGCTATCAGCTTCAAGGAACAGATGCTAAAGTCTTACGACTTCCTTATTTCGTACTCTAAGGAGCACACATTCCTGGACTCTCCTGATGACTTCACCCCTCACGCCACCATCAACATGGAGAGGACAGCAGTGGAGTGTTATGAGTGTTTGCCAAAAGTAGAAGTGGTGGAGGATCATGAGATAGCGGCTGATGTTAAAAAGGAGGAGCAGATTGAGGATAAGTATGCTTTCGAGGTAGCTATAAAAGAAGAAACTTTTGACGACCCATACTTCCAAGATATGCCTGCTGTTGACAATGATATCACATCGGATGAAGACGTGCAGCTTTCTAAACTGAAAGAGACGGAGAAAGGGAAGAAGAAGAGAAAGAGTGAGAAGAAGAAGGAACGGGAGAGAGATCGGATGCCAGCCAACAAACGACCGAGAAAGACGACACGAGGTCTCTATGACATAGCACAGTTTGAAGCTGCATATGACCAAATTGTCAATCACGGGGTCTCAGTACGACAAGCGGCCAAAATGTTCGATATCACACACGTCACCCTCCAAAGATACAAAAAACGGCGTCAAACCACTCATTTTCCCGTCAAAGTCGGTTATGCACGTAACAGTTTTTATACAGCAGATCAGGAAACTCTCCTAACGGAATACTTGAAAAAATACGCGGAGATATATCCAGGGTTATGCGTGAGGGTAGTCAGAAAGTATGCTACGGAATTCAGTCAGAAGCTGGGTTTGAAAACTCCGAAGCCTTGGGTTGACAATGAAATGGCTGGCGTCGATTGGTACAAGAACTTTATGTACAGGAATAAAGTGTTAGAAGATAAAATTGATCGGCAAACTGCTAAGGAGAAAGTTAGAGTTTTTTATGATCGGCTGTGGAGTATTTTGTGCCAGTACAATTTTGGTTCAGAAAACATTTACTCTTTAGATGAAATAGGAGTTAATATTGAGGAGTTTAGAGATAAAATTTGGTTGATGACAACGAAAAATGGACCTATAGCTCTGAAAGAGTCTAAAGTTGTGTTCACTTACGCAGCGAACGCTAAGGGTTATGTCATACcccctttatttttattaccagCAGAGAAAAAAGAAGAAACTCCGAAAAACAACGTTGAAGTCAAAATAGAGAAAGATTTGGTGAATGAATCAGATTACCCGAACGAGACAACTTTTAATGAATTCTTAAAAAATGGCGTCGATTTAAAAAACCTACCCGATTGGACGGAAGACCCTAATTTCTTGGTGGTCTCCCCGAAGCGCCAGAAGACTAAGAAGGAGAAAAACCCCAACAAAAAGAGTAGGAAGCTAAAGAATCTTCCAGAAGAATTAGTAGAATTGTACACTATGAGTAAAGAGGAGATGTGGGTTATCCGGATTGAAGATCTCAACAGCAAGGAGTTTCAGAAGCTTAAGTATAGGTGTGATGATTGCATCATTGCCTTCAACACTGAGAAGCTGATGCATGACCATCTAAATGGAAAACACCAACCTAAAAGTGAAGACTGCCATCAATGCTCAATCTGTCAGGCCTATTTTCTAACTAAAGACAACGTGGCCGCGCACAAGGCGTTACACCAACAGGGCTATAAGTGTCGGGAGTGTGGTTTCAATACTACCCTCAAACGACGCATGTTGAAACATGTCGGGAGTCACGCGCCGAGTGGGGATGCTCATGTGTGCCAGACTTGTGGGACTAGCTTTAGCACAAAATCGAAGCTAACATACCACCGCGGCGTGTGTTGTCAAGAAAAGCCACAATGTGACTGCTGTGGAAAAGTATTCGCCAACAAAATGACGCTCAAGTACCATCTCAAAATCCTGCCTCAGAATAAAGACGATAAACCTAAGGAGAAGTTGTTCATACCGTGCAAGGGATGCGATAAAGTGTTCCATTCAAAGAAGAGCTATAGAGCGCATGTTGTAATCCACGACGGCCTAACCTACCCGTGCCCAATCTGCGGCAAACTGTTCCAATGGAAGCGCAACCTGGCGCGACACTCGCGCAACCATCGCGAGCGACAGGCGGGCAACTTGCACGAGTGCCGCGCTTGCAGCAAGACCTTCGCGAGCAGGGACTGCTATAACAACCACATGCGGCTCAGCAAGAAGCACGTGTCCCAGGATACTTTCCCACACGAATGTAACTACTGCGGAAAGAAATTCGCTACAAAATGGTGCCTGACCGACCACATCGACTGGGATCACTTGAAGAAAATCAAATACCAATGTAGCTTCTGTTTTAAGGCATTCAAAACGGCTAAAATATTGGTGGCTCACGTCAATAATATACATGAGGGAAAGAAAGTAGAGGCGGAGGGCGAACATCTGTGCGAAATATGTGGGAAATCATACAGGACAGTGAAACGCTTAAAGGGCCACGTATGGGCGATGCACACAAAACGATCTAGCAGCAAGATATACAAATGTAAGCTGTGTCCGGCGACGTTCATGTGGCAGACCAGCATATACAAGCATATGAAGATGATGCACGACAATAATAAGAAGAGCAAGACACCGCGCACCGTCCAACCTGTGAAGAAAGAAGAGCCttacccgggaatcgaactaGCGAACCGCATGCAGTACTTCCAACAAAACATTGGCGGCAACTTAAATATAGTTCACATACAGCCTTTGGGAATGACACAGAATATTGTGTAA
- Protein Sequence
- MKEVNINIEGYNVNGICVGCLNYNRQMFYHPFVKECFRLLGNIDVPDGLEVQVCWECLARVKSAISFKEQMLKSYDFLISYSKEHTFLDSPDDFTPHATINMERTAVECYECLPKVEVVEDHEIAADVKKEEQIEDKYAFEVAIKEETFDDPYFQDMPAVDNDITSDEDVQLSKLKETEKGKKKRKSEKKKERERDRMPANKRPRKTTRGLYDIAQFEAAYDQIVNHGVSVRQAAKMFDITHVTLQRYKKRRQTTHFPVKVGYARNSFYTADQETLLTEYLKKYAEIYPGLCVRVVRKYATEFSQKLGLKTPKPWVDNEMAGVDWYKNFMYRNKVLEDKIDRQTAKEKVRVFYDRLWSILCQYNFGSENIYSLDEIGVNIEEFRDKIWLMTTKNGPIALKESKVVFTYAANAKGYVIPPLFLLPAEKKEETPKNNVEVKIEKDLVNESDYPNETTFNEFLKNGVDLKNLPDWTEDPNFLVVSPKRQKTKKEKNPNKKSRKLKNLPEELVELYTMSKEEMWVIRIEDLNSKEFQKLKYRCDDCIIAFNTEKLMHDHLNGKHQPKSEDCHQCSICQAYFLTKDNVAAHKALHQQGYKCRECGFNTTLKRRMLKHVGSHAPSGDAHVCQTCGTSFSTKSKLTYHRGVCCQEKPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHSRNHRERQAGNLHECRACSKTFASRDCYNNHMRLSKKHVSQDTFPHECNYCGKKFATKWCLTDHIDWDHLKKIKYQCSFCFKAFKTAKILVAHVNNIHEGKKVEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKSKTPRTVQPVKKEEPYPGIELANRMQYFQQNIGGNLNIVHIQPLGMTQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01441431;
- 90% Identity
- iTF_01094841;
- 80% Identity
- iTF_00925197;