Lfer028184.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453268.1:3249534-3293999[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.7e-05 0.43 11.5 0.1 20 48 257 285 251 289 0.85 2 10 0.029 1.9e+02 3.1 0.0 21 48 286 313 284 317 0.86 3 10 4.4e-05 0.29 12.1 0.0 21 46 314 339 311 346 0.86 4 10 0.3 1.9e+03 -0.1 0.0 21 44 342 365 339 370 0.76 5 10 4.2e-05 0.27 12.2 0.0 20 46 369 395 361 401 0.85 6 10 0.0084 54 4.8 0.1 21 48 398 425 395 430 0.85 7 10 0.022 1.4e+02 3.5 0.0 20 45 788 813 782 819 0.87 8 10 1 6.5e+03 -1.8 0.1 26 36 926 936 922 947 0.72 9 10 5.3e-05 0.35 11.9 0.3 18 49 946 977 935 980 0.86 10 10 0.0037 24 6.0 0.0 21 43 977 999 975 1004 0.90
Sequence Information
- Coding Sequence
- ATGCGAATCAAACAATCTGGTTTTGATGATACCTATTCACAAGTCCACGAAGAAACAGAACAAATCAATGGGCGAGTAGAGGGAGTGACTTCTGGAGCCGAATTAAATACAACAAGTAATAATGATCAGCCATTAGATTTGGGTAAGAGAGTGAAACAAGAACCCAAGTGGGATGTAAAGACAGATTCTCCACAGTGGTATCAATCAATAGGATACATAGGAAAGGCCCTCACAAAGCAGAATTTTAACGACTTAAATGATCTTAAGTCAGCGGGAGAAAAGAAAATTACTATAGTGAAATTGTTCTGTGAAAAATGTTGTACCAAATTTCCTGATCAGATCGCACTAAAAGAGCACATCTGTAACAACTCAAAGAGAAAATCTTGTTCgGCATGTGAAATCAACGGCCAATCGGAAAGGATGACGTCTGGATCAAAAAACTCTCAACTATTGGATGTGGAGATAGCAGTGAAACAAGAACCCAAATGGAATGAACCTGAGGCACCATGCTGGGAGGTTCCCGTAGAGTATGTGGTGCCTAACATGCCACCGGACCTTGAGGAGCGTTTTGAGGCGACTTCGGCAGCGAACGGTATAGCCGCACAAGGTTCCGTTACCGCCGAGGCATCTACTGCATTAGAATACGctgaaaataatcaaatttattcaTATCACAATAGTGAGAATTTTTGCCAACTATTAAGCCAACACATGCTTGCCGACACAAGTGAGAAACGATTTGCTTTTAATACAGATGTGAGTGTACAGACTGGTGAGAAACCGTTTTGTTGTGAGATATGTGATACAAAGTTTAGTCGCTCTACAAACTTGAAGAGGCACATGCGTGTGCACacaggcgagaaaccatttagttgTCAACTGTGCGAGGCTAAATTTTCTCGCTCGAGTCACATGAAGACACACATGAATGTGCATActggtgagaagccatttagttgtgaaTTATGTAAGGCTAAGTTTACTCAGTCAAATAATTTGAAGAAACACATGCTTGTACATACCGGTGAGAAACCGTTCAGTTGCGAAATATGTAATTCTAGGTTTTCTCGATTAAGTCATATGAAGACACATTTAAGCGtgcacactggtgagaaaccttATAGTTGTGAATTATGCGATGCTAAATTTACgcaatcaaataatttaaaaaaacatatgctTGTACATACCGGTGAGAAACCGTTCAGTTGCGAAATATGTAAAGCAAGGTTTTCTCGATCTAGTCATATAAAGACACATATGCGTGTCCATACTGGTGAAAAACCGTATAGTTGTGACAGATTGTCAAAACTGGACATGCGAGTAAAGCAAGAGCCTGGTTATGACACTAGTACTTCGGAACAATGTGAGCTGGTCATTACCCCCATAGTGGTGCAACCACAAAAGGACTCCTCTATTAGCACAGACAGCACAGAGGTGAATAATGACGTGCGTGCAAAACTGATCAATAGAGGAATGGAGAATGGAGAAGAACTTCAAATAAGACATGAGTTATACAGCAGAGCGACAATCCTCAAAAGGCATTTACCGCTTGATGCGAATCCTCTCTATGACAGCATCAATTTGGAAAATGGGAAGACAATGTATTCCTGCAAAATATGCAATGCTAAAGCGAAATATCGTTCGAAAATCCTAGAGCATGTATACCGTCATACCGACGAGAAACGATATCAATGTGACATATGTAATGAAAGGTTTAGATCAAAGTATTACATAAAAGAGCAAGATTGCATACCGGCGAGAAACCGTTTAAGTGTGATGTATGCAGTGCAAGCGGAGTTGTCCTTAACCAGCAGTGTCGGTAATCAAGTGCGTACAGCAGAGAAAACAGTTACTTCAACGGGGTATTTCTGCGAAACATGTTCTGTGAAGTTCCCTCATGAAAATGGTTTAAAACAACACATCTGTAACAACAACACGAGGGAGAAACATTGTGTGACAGATGGTGACACACCTGAAGAGCTGATTACAGTGAAGGTCGAAGAAGTAGACCCCAAAAAGAagCTGGAAACTGCTGAAGATGTAGTCAAAGTCGAAATTGACGGTGATGCTTCGAAACTCGACATCGGGCCAACTACATTGCAGCGACAGCTTACGCCAGACCTTGGCATGAGTTTGAATGTAGTCGGTCAGCCATTAGTGAAGCATGAATCTGCACGAGACGAGGACGTCGCAGAGACACCATGCATGACGTCCAGCTCAGCGCTGCTGCTGGAACGGCGTGTGGACTCTGAAATGGAAAACGGCAAACAAGCCCTCTCAAACGTGGAACCAAGAACTGTACTCCAGCATGCTGAACCAATCGAATCTCATAATTTAAAGTTACACACGTCCACACGTACCGGCGAGAAACCGTTTAGTTGTGACGTTTGCGATGCAAAATTTTGTAGAATGCTTCATTTGAAGAGACATATGTACGTACACACGAGTGAGAGTTCATATAAATGTGTTGTATGTAATGCTAAGTTTGTGGATACAAATATGTTGAAGGAACACAGACATGCTTGTAAGGGATCGAGTCGCCTCACTAGTGAGAAGCCATGTGAAGAAAAGTTTTCCCCATCGGGAAACACTGATGCGAGTGACTTGgtaGATGACGGCTTGCATATAAAGATAGTCGAAATAAAAGCGGGcatagaaaattctgaaatcgAACATGAACCAAAAATCATACAGACAGATCTTAAGCAATCTATCCAGCCTGATTCGGCGCAACTGTATGACCATATTTCGGATAACGGAAAGAAAGTGTATTCGTGTAGAATTTGTAATGCGAAAATCAAAAATCGTTCCAGAATGTCGGAGTATATACACCGTCATACAGACGAGAAACCGTATCATTGTGATATATGTTATGCGAGATTTCGATCTAGTTATTATGTAAAAGCTCATAAAAGGTTGCATACCGGCGAGAAACCTTTTGGATGTAATATTTGTGAAGCAAGCTTTAGATTCGCAAGCTCATTGCGCACCCACGAACGCATCCATATTGACGAGGAATCTTATATAAATGATGTTTTTGCTGCTAAATTACGAACTGATAATTATCTTAACCCAAATGAAGAAGTGAACGTCTCGCAACCGCCTCCAACTAACATCGATAAACTAATGtgtaaagaagaaaaaatgGTTAGTTCAATAAAGTTGTCCTGTGATACATGTTATATTGGATTCACAGATCAAAATGCTATGAATGATGAGGCAAAGATATATACGGCGCACAACGGGTCGTTCAAGACAGAGGCTGACAGTGAAATGCCGCATAGTACACAGGAATTGGACGTCGGCCCAACTGTACTACAGCCACGAGTTACGCTTAGTCCAACCCAACGCGTGGCAgagGACGAAGACGTCGAAACAGATCGAAGCAGGCCGACCGTGAAATCTTTGGCAACCAGCTTCCTAGCGGAGCGGTATACGGAACTTGCTGCTGTTAACCCTGCAGAAGTACAATATGTCACAGAGAGACCTGTTAAATTGAAAGCCACTAAAAAGAAATCACACGCATCTGGACAATTTGCAACCAGTTCCACTAGTAATCAGGACCCAGTAAAAGACGACTTAATCACTACAGCGAAGTCATTctgtgaaaaatttaatatcaccGATTCTAACGAACGAAAAGAACATGTCTGTAGCAACATGAAGGACGAACATCGCATGGTATGCGATTTGATGAGTAAGGAATTGACCAAAGGTGAGGTGGACCATCACCAACCTGATATCAAAGAAGAATTGGATATCGGTCCCGTAGAATTACACAAACGGTTGCCTCCCCGCTCAGACCATTTGTATGACATCACCCATTTGGAAACCGGAAAGAAACTATATTCCTGCTTAAAATgcgatttaaaatacaaatatcgaTCTAGAATATTAGATCATTGGCTGTCGGAATCAGCGAGATTCCACATCGCCAGCGGCCAACCGGATAAAGCCTGTAATTTATAA
- Protein Sequence
- MRIKQSGFDDTYSQVHEETEQINGRVEGVTSGAELNTTSNNDQPLDLGKRVKQEPKWDVKTDSPQWYQSIGYIGKALTKQNFNDLNDLKSAGEKKITIVKLFCEKCCTKFPDQIALKEHICNNSKRKSCSACEINGQSERMTSGSKNSQLLDVEIAVKQEPKWNEPEAPCWEVPVEYVVPNMPPDLEERFEATSAANGIAAQGSVTAEASTALEYAENNQIYSYHNSENFCQLLSQHMLADTSEKRFAFNTDVSVQTGEKPFCCEICDTKFSRSTNLKRHMRVHTGEKPFSCQLCEAKFSRSSHMKTHMNVHTGEKPFSCELCKAKFTQSNNLKKHMLVHTGEKPFSCEICNSRFSRLSHMKTHLSVHTGEKPYSCELCDAKFTQSNNLKKHMLVHTGEKPFSCEICKARFSRSSHIKTHMRVHTGEKPYSCDRLSKLDMRVKQEPGYDTSTSEQCELVITPIVVQPQKDSSISTDSTEVNNDVRAKLINRGMENGEELQIRHELYSRATILKRHLPLDANPLYDSINLENGKTMYSCKICNAKAKYRSKILEHVYRHTDEKRYQCDICNERFRSKYYIKEQDCIPARNRLSVMYAVQAELSLTSSVGNQVRTAEKTVTSTGYFCETCSVKFPHENGLKQHICNNNTREKHCVTDGDTPEELITVKVEEVDPKKKLETAEDVVKVEIDGDASKLDIGPTTLQRQLTPDLGMSLNVVGQPLVKHESARDEDVAETPCMTSSSALLLERRVDSEMENGKQALSNVEPRTVLQHAEPIESHNLKLHTSTRTGEKPFSCDVCDAKFCRMLHLKRHMYVHTSESSYKCVVCNAKFVDTNMLKEHRHACKGSSRLTSEKPCEEKFSPSGNTDASDLVDDGLHIKIVEIKAGIENSEIEHEPKIIQTDLKQSIQPDSAQLYDHISDNGKKVYSCRICNAKIKNRSRMSEYIHRHTDEKPYHCDICYARFRSSYYVKAHKRLHTGEKPFGCNICEASFRFASSLRTHERIHIDEESYINDVFAAKLRTDNYLNPNEEVNVSQPPPTNIDKLMCKEEKMVSSIKLSCDTCYIGFTDQNAMNDEAKIYTAHNGSFKTEADSEMPHSTQELDVGPTVLQPRVTLSPTQRVAEDEDVETDRSRPTVKSLATSFLAERYTELAAVNPAEVQYVTERPVKLKATKKKSHASGQFATSSTSNQDPVKDDLITTAKSFCEKFNITDSNERKEHVCSNMKDEHRMVCDLMSKELTKGEVDHHQPDIKEELDIGPVELHKRLPPRSDHLYDITHLETGKKLYSCLKCDLKYKYRSRILDHWLSESARFHIASGQPDKACNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923932;
- 90% Identity
- iTF_00923932;
- 80% Identity
- iTF_00923932;