Lchi019387.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- -
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000245.1:748305-758349[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 9.7e-06 0.00097 20.1 0.7 1 23 203 225 203 225 0.98 2 30 0.00027 0.027 15.6 0.6 2 21 259 278 258 279 0.93 3 30 2.7e-05 0.0027 18.7 0.4 3 23 312 333 310 333 0.96 4 30 6.4 6.4e+02 1.8 0.2 2 12 354 364 353 366 0.85 5 30 0.0018 0.18 13.0 1.2 1 23 384 407 384 407 0.97 6 30 0.0091 0.92 10.8 0.1 1 23 424 446 424 446 0.96 7 30 0.00019 0.019 16.0 2.6 2 23 487 508 486 508 0.97 8 30 0.00052 0.052 14.7 4.2 2 23 549 571 548 571 0.97 9 30 0.00017 0.017 16.2 1.4 1 23 621 644 621 644 0.96 10 30 0.00089 0.089 13.9 0.1 1 23 700 722 700 722 0.97 11 30 0.019 1.9 9.8 6.2 2 23 734 755 733 755 0.97 12 30 0.072 7.2 7.9 1.8 2 23 767 788 766 788 0.96 13 30 0.016 1.6 10.0 1.1 1 23 798 820 798 820 0.98 14 30 0.00066 0.067 14.3 6.8 1 23 849 871 849 871 0.97 15 30 0.00015 0.015 16.4 4.3 1 23 882 904 882 904 0.98 16 30 0.0012 0.12 13.5 1.1 1 23 912 934 912 934 0.97 17 30 0.0025 0.25 12.5 0.1 2 23 954 976 953 976 0.97 18 30 1.1 1.1e+02 4.2 1.0 1 23 994 1016 994 1016 0.91 19 30 0.17 17 6.7 3.9 1 23 1023 1045 1023 1045 0.97 20 30 0.018 1.8 9.8 3.7 2 23 1056 1078 1055 1078 0.95 21 30 0.0047 0.47 11.7 0.2 2 23 1101 1122 1100 1122 0.95 22 30 6.9 7e+02 1.7 5.9 2 23 1165 1187 1164 1187 0.94 23 30 0.0069 0.69 11.1 0.2 3 23 1204 1224 1202 1224 0.94 24 30 0.15 16 6.9 5.3 3 23 1232 1252 1230 1252 0.96 25 30 0.012 1.2 10.4 0.8 2 23 1263 1285 1262 1285 0.95 26 30 3.5 3.6e+02 2.6 6.8 2 23 1302 1320 1302 1320 0.93 27 30 0.13 13 7.1 0.9 2 21 1324 1343 1324 1344 0.93 28 30 0.19 19 6.6 0.4 2 23 1393 1414 1392 1414 0.93 29 30 0.00045 0.045 14.9 0.5 2 23 1425 1447 1424 1447 0.96 30 30 0.58 58 5.1 2.1 2 19 1485 1502 1484 1505 0.91
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTCGGAAAATGTAGGCTTTGCCTCAAACTCGGCGACTTTTACTCCATCTTTACGATGGATAACAATCTGCAGCTCGCTGAGATGGTGATGGAATGCGCTCGAGTAAAGGTATACGAAGGGGATGGACTACCTGACAAGATATGCGCGGAGTGCATACAGAAGCTCAGCAGCGCACATATATTCAAGCTCCAGTGTGAGAGGTCGGACCAGGAGCTTCGACGTAACTATGTGCCGCCGCCGGgTTTCAGCACCACACCTTCACCACCGAACAGGCAAAGCAGCGACTCCGCTTTTTCAAACAATACCGACATATCCAGCAACAACAAGCCTATACCGTCATCAAGTGAAACCAAGGCCACTCCTGCAAGTCGAAGCCGTAAACGCAGCCGGGAGAGCATCGACAATGCCTCATCCAGTAGTCAGTCACACGACTTCCGGCCGAGCTCCACGAAGCGGGTGGAAGAGCTCAGAGCCTCACAGAAAAGGCCTAGAAAAACTCTGAACACTTCCTACATAGACTCAGACTATGACGACAATAGCGTATCCCACTTTTCATGCGAAACCGACTCTGATGAGCCTCTCATGAAAAGCGAATTCAAATGCAAAGTTTGCGGTAAAGAATTCGCCTCTAAAACAAGCGTAACGGCACATACCAAAGTGCATTACAGGAAATCACTTGCAAAGAACGCTGTAGTGGACATACCGAAGCCGGAGGTCAACAACGTGAGCATTGAAGACGCTACAGACGTCGAGGACAAACTCACGTGCGAGAAATGCGACAAGACGTTCAAATTGAAGATTATGTTGAAGCGCCATCTAGACACTTGTGGCAAATCTCCGCGGAAGTCGCCCATGAAGGAGTTGCTAGTGTCGCTGGAACCGATTGACGCGAGCTCGACGCCCGAACCGAACAAGCTGGACTGTGAGATGTGCACGACGAAGTTTAAGACAATCGAGAACTTAGAGAAGCATATGAGGGTAGTCCACGCGGCCGTTCTCAAACGTGATAATTACGACTCGAAGGTGGTGAACGGCAAAGTGAGCGTCCCCTGTTACTATTGTGGCGAACCTTTCGAGGACTACTACGTTCACAGCGCTCACTTCGATTCCTGTTCCAAAAAGGACGATTCAGTTACCTTCACCTGCCCCATCTGCCAAAAGGTGATGAGCAGAAAGAACTCATACTTCCTTCATATCAAAAATATGCATTTCGAACCTCGATGCAATAAGGGCGAAATTAATACCAAACAGTCATTTTTTGAGTGCCGCATATGCAGTAAGAAGATGGCAACGCAAGATCAACTTATCACCCATCTTGCTGCCCACATGTCTAATATAGACGATAATGAAGAAGGTGCTGAGGAAGGCTCTGGATTGAATCAAGTAGAAGACGACGTCTCCGTGACATCGAACTACAGTAACTCGAACGTACCAAGTGGACCTTTGAAATGCAGCATGTGCGATAAACGGTTCACATACAGGAAGTCGCTGCTTAGTCACGAACAGAGACATTTGACAGGAGATATAGAGATAAAGACTGAGCCGCCCGACAAAAATACGTCCAGCAGTCTGCTGAGCGAGACGTACCATCAGTCGGAGTCAGAATCTAGTCAGGAGGAAGGGGACGACAAAACGTGCGACATTTGCGAAAAGCAATTCTCTTACAAACGTCTGTTGATCCATCACAAGCGGACCAAACACAACGTAAGCTCGGGCACGAAGCGAGCGAAAATCAACCTCAAGGACTGTTCCGTGCGCTGTTTGATTTGCGATATCGAGATGAAGGTTAGCGCGATTAACGAGCACAATCAGAAACACATATCCGTGAACATTAAACCGAGGAATCTCTACACGTGTGCGGAATGCGACGCGAAGTTTAAGAGTTGTAGCTCACTAGCAAATCACATTAAATTTGTTCATAGATTGAAACAGCCACCGGCGCCCAAGCTCGAAGGTGCAGACTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGTAACAAACCAGAGTCACAACGACTTTGGTACGGTTCCGTCGAAACAGGAGGGGGGTCCGCTGGTCAATTTGAGCGGATTCACTTGCCCGATATGCGGCAAGCAGATGCCTACGTTGATATCGCTGAAGAGGCACGTCAACTGGCATTCGAACGTCGGCAACAATATCGAGAAGAAGCAAGAGTGTTTTGTCTGCAAAGAGACTTTCCGGTTTCAATGCCACTACCGGCTGCACATGCGCGAACACTACAACGACACCAACCTGGACCCGAAGCTGCTCACCTGCTCCATTTGCAACCGCAAGAGCAAGCACCTGCGAGCTGCGCAAGCGCACATGAACTTCCACAAACAAACGCGCTTCAAGAACAAGGACTACCAGTGCTCGATATGCAAGAGAATCTTCCAGTTCAGGAAAGTATACCTGTCCCACATGGCGATACATTATAAACGCGGCGAGAGCGTGAACAACACCGTTGTCGGCTGCGGACTGCCGAATTCCGCAGATAAAACTGTGTTTGATGGGAAATTCACATGTCACCACTGCGGAAAGGTTTGCGACTCTGAAACCTCATTGAAACACCATATCATATGGCATAAATCCAAGACTTCACTTTTTGGCGCACGCCACGAATGCCACATTTGCAATATCCAGTTCACCAACAAGAGGAGGTTGGAGCTCCACATCAGAACTCACTATGAGGATGAAAACGGTccatataaatgtaatgtatgtgGCAAAGGATTCATCGACGAGGATTATCACAGAAGACACGTGAAGGGACATAATTTCGATCATCAGTCACATAAGACAAGGATAGAAAAACTGAGGAAGGATAAGGTGAAGTGTCCAATTTGCGCCCGTTACTACCCGGACTTGGTGAAACTCATACGCCATTTGCGACGGACGCATCCAgaaagcaaaatgataaaatcCGATCCGGACGCACCGGCCCAAAACTATTTCTCATGCAAGCTATGCGCTAAAGTATTCTTAGACGAGCGTAGGTTACAACACCACGAGGAGGCACATTTGCGGAAGCCTGAGTTCTTCAAATGCAAATTTTGCGGCAAAAAGACCATCTCATTGAAGAATCATAGACTCCACATTAAAGCTCACTTAACTCAGAAATACATTGATGATCCACTGAAATGTATGCACTGTGATGAAACTTTCACGAAAGGATACGACTTACACTATCACCTGCGTGATACACATGATATTAATGAGACATGGATTGCGGAGCGCACGGAGAAGGCGTTGAGCGGGCCTCTGAAGGAATTGCAGTGCTCCATCTGCCTTAAGATATTGGCCAGTAAAGGCAACTTTGAAAGGCACATTGACTACCACAACTCGTTAAGATGCAACTACTGCTTCGACTACTTCAGCTCACTGAGATTCTTGGAGGGGCATCTTGCATTTAGTTGCGAGAAGAAACGGTTGATTGGAGACACCGAGGTATATTCCAAGAAAGTAAAGTGCCATATATGTTACAAAGCTTTCCATTTGCAAGTGAAATTGGACTGTCATTTGCGCACGCAGCATGGTATAAAAGTTTGCAAAGAGGCATCCGAAGGGAAGAAGGAAATCATCTGCGATTATTGCTTCCGAGTATTTGAAAATGAGTATGCCTTGAGCACTCACAAGATTTACCACCGCACTGTCGGGTTTTACGGGTGTTTGTATTGTAACAGAAAGTTCAACACAATGACGCTGTTCAAAAAGCATAAGAACCACCACTTCTCTCAGCTTAACGTCGATAATCCAACAAAATGCGAGCACTGTGACGAGACCTTTGTAGCGTTCAGAGAGATGATTTACCACATGAGAGATGTTCACGGCGACGAAAAAGAGTGGATAGTAATGCCTAAAGAATCTATAGAGGAGAAGTGCCATATTTGcaacaaaatattcttcaatctCCATAAGCATTTGATGTACCATGAAGAGAATAGATGCAAAAAGTGCGGGGAATATTTCTACTCTCAAATAGACTATGACAATCATCTGTGTGCTATAGAAAGCGACGACGAAGTGGACGAAAACAACGAGAACGATTTACGCCCAAAATATGAAGAATGTTCATTTTGCTTCAAGCCCACAACGAAAAAGAACTCGCAACGGAAACACGATCACATACACAGAATCTCTGGCTCGATCTCTTGTCGCTTTTGCCCTctcaaatttaaaactattgatgCATTCAATATACACGCATTCTCCCACAGAAGTAGgaagtacaataaaaaaccgATAAAGTGTAGAAAGTGTGGTGAGAAGTTTATTCGTTACGGTCCCTTCATAAAGCACATGAAGTCTGTGCATAAGTCCACTCAGAAATTGCATTATCGGACCTTGGTAAAGCCTGAGCCTTGTGTTGTTTGCGGTGACGAATTTCCAAATCTTCACAACCATTACAGAGCGCATTTGCAAAATCAATGTCAGCTGTGTAACAAATACTTCACATCCTACAAACTCTATTCAATGCATGAATGTGATAAGGAAGATTCAGATCCATCAAAAGTGTTTACATGTGACGAAGACATAGTAAGTCTGATTAATTCGTACGCCCCGAAAGACGAAAAGGATGATGAGAAGTTTTATGGTCACAGTGATGATGAAGAGGAATTAGTGGAAGGGGGAATTGAAATTCGTGACAATGAATATACAACACAGGATGAAGAAAGCCAGAACTCATCAGATGCAAATATGCACATGATGGTCCATACACCTATAATATCAGATGTCCTGTCCCTGTATGAGAAGAAGGAAGAAAAATTACCCATTGGTGTTGATGATATTGTTAATTTGTCTGACGATGACACTTTGGACGGACAACAAATTGTAACAGTTATAACAATTGATGATTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTMDNNLQLAEMVMECARVKVYEGDGLPDKICAECIQKLSSAHIFKLQCERSDQELRRNYVPPPGFSTTPSPPNRQSSDSAFSNNTDISSNNKPIPSSSETKATPASRSRKRSRESIDNASSSSQSHDFRPSSTKRVEELRASQKRPRKTLNTSYIDSDYDDNSVSHFSCETDSDEPLMKSEFKCKVCGKEFASKTSVTAHTKVHYRKSLAKNAVVDIPKPEVNNVSIEDATDVEDKLTCEKCDKTFKLKIMLKRHLDTCGKSPRKSPMKELLVSLEPIDASSTPEPNKLDCEMCTTKFKTIENLEKHMRVVHAAVLKRDNYDSKVVNGKVSVPCYYCGEPFEDYYVHSAHFDSCSKKDDSVTFTCPICQKVMSRKNSYFLHIKNMHFEPRCNKGEINTKQSFFECRICSKKMATQDQLITHLAAHMSNIDDNEEGAEEGSGLNQVEDDVSVTSNYSNSNVPSGPLKCSMCDKRFTYRKSLLSHEQRHLTGDIEIKTEPPDKNTSSSLLSETYHQSESESSQEEGDDKTCDICEKQFSYKRLLIHHKRTKHNVSSGTKRAKINLKDCSVRCLICDIEMKVSAINEHNQKHISVNIKPRNLYTCAECDAKFKSCSSLANHIKFVHRLKQPPAPKLEGADLADFCEVVVTKAEPLVTNQSHNDFGTVPSKQEGGPLVNLSGFTCPICGKQMPTLISLKRHVNWHSNVGNNIEKKQECFVCKETFRFQCHYRLHMREHYNDTNLDPKLLTCSICNRKSKHLRAAQAHMNFHKQTRFKNKDYQCSICKRIFQFRKVYLSHMAIHYKRGESVNNTVVGCGLPNSADKTVFDGKFTCHHCGKVCDSETSLKHHIIWHKSKTSLFGARHECHICNIQFTNKRRLELHIRTHYEDENGPYKCNVCGKGFIDEDYHRRHVKGHNFDHQSHKTRIEKLRKDKVKCPICARYYPDLVKLIRHLRRTHPESKMIKSDPDAPAQNYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRLHIKAHLTQKYIDDPLKCMHCDETFTKGYDLHYHLRDTHDINETWIAERTEKALSGPLKELQCSICLKILASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKRLIGDTEVYSKKVKCHICYKAFHLQVKLDCHLRTQHGIKVCKEASEGKKEIICDYCFRVFENEYALSTHKIYHRTVGFYGCLYCNRKFNTMTLFKKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDEKEWIVMPKESIEEKCHICNKIFFNLHKHLMYHEENRCKKCGEYFYSQIDYDNHLCAIESDDEVDENNENDLRPKYEECSFCFKPTTKKNSQRKHDHIHRISGSISCRFCPLKFKTIDAFNIHAFSHRSRKYNKKPIKCRKCGEKFIRYGPFIKHMKSVHKSTQKLHYRTLVKPEPCVVCGDEFPNLHNHYRAHLQNQCQLCNKYFTSYKLYSMHECDKEDSDPSKVFTCDEDIVSLINSYAPKDEKDDEKFYGHSDDEEELVEGGIEIRDNEYTTQDEESQNSSDANMHMMVHTPIISDVLSLYEKKEEKLPIGVDDIVNLSDDDTLDGQQIVTVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00204514; iTF_01143279; iTF_00840434; iTF_01337910;
- 90% Identity
- -
- 80% Identity
- -