Ipod004761.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- -
- Assembly
- GCA_933534255.1
- Location
- OW152817.1:14318524-14327585[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00013 0.011 16.4 1.8 1 23 199 221 199 221 0.98 2 28 0.0004 0.033 14.9 0.6 2 22 254 274 253 274 0.94 3 28 0.00027 0.023 15.4 0.4 2 23 305 327 304 327 0.96 4 28 3.4 2.9e+02 2.5 0.4 2 12 347 357 346 360 0.86 5 28 0.00095 0.079 13.7 0.1 1 23 395 417 395 417 0.96 6 28 9.3e-05 0.0078 16.9 1.6 2 23 455 476 454 476 0.97 7 28 0.0013 0.11 13.3 4.1 2 23 517 539 517 539 0.97 8 28 2.8e-05 0.0024 18.5 0.9 1 23 589 612 589 612 0.97 9 28 0.00077 0.064 14.0 0.1 1 23 668 690 668 690 0.97 10 28 0.015 1.2 10.0 6.6 2 23 702 723 701 723 0.96 11 28 0.017 1.4 9.7 1.6 2 23 735 756 734 756 0.96 12 28 0.0093 0.78 10.6 1.4 1 23 766 788 766 788 0.98 13 28 0.0028 0.23 12.2 7.7 1 23 817 839 817 839 0.96 14 28 0.073 6.1 7.8 6.0 1 23 850 872 850 872 0.97 15 28 0.0014 0.11 13.2 1.2 1 23 880 902 880 902 0.97 16 28 0.00062 0.052 14.3 0.1 2 23 922 944 921 944 0.97 17 28 0.97 81 4.2 1.0 1 23 962 984 962 984 0.91 18 28 0.081 6.8 7.6 3.6 1 23 991 1013 991 1013 0.97 19 28 0.002 0.17 12.7 2.7 2 23 1024 1046 1023 1046 0.95 20 28 0.0014 0.12 13.1 0.2 2 23 1069 1090 1068 1090 0.95 21 28 0.0018 0.15 12.9 0.2 2 23 1171 1192 1170 1192 0.95 22 28 0.18 15 6.5 4.2 3 23 1200 1220 1198 1220 0.96 23 28 0.01 0.87 10.4 0.8 2 23 1231 1253 1230 1253 0.95 24 28 0.91 77 4.3 5.4 2 23 1270 1288 1270 1288 0.88 25 28 2.9 2.4e+02 2.7 1.6 2 20 1292 1310 1292 1312 0.92 26 28 0.24 20 6.1 1.5 2 23 1361 1382 1360 1382 0.93 27 28 0.0017 0.15 12.9 0.2 2 23 1393 1415 1392 1415 0.95 28 28 7.5 6.2e+02 1.4 3.8 2 19 1453 1470 1452 1472 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTCGGAAAATGCAGGCTTTGCCTCAAACTCGGCGACTTCTATTCCATCTTTACAGTGGACAACAATCTGCAACTCGCTGAGATGGTGATGGAATGCGCTCGAGTTAAGGTACATGAAGGGGACGGACTACCTGATAAAATTTGCTCAGAGTGCATACAGAAACTCAGCAGTGCTCATATTTTTAAATTGCAGTGTGAAAGATCGGATCAGGAGCTTCGGCGCAACTACATACCGCCACCTGGTTTCAGCAACACACCTTCACCGCCCAACAGACAGAGCAGCGACTCCGCCTTCTCAAACAACACTGATGTATCCGGCAACAACAAACCCGCACTAGAGGCCAAGGTCACCGTCGACAGCCGCACCCGCAAACGCAGCCGGGAAAGCGTCGACAATGCCTCATCCAGCAGCCAGTCGCACGACTTCCGGCCGGGCACCACCAAGCGGCTCGCGGAGCTGAGGTCCTCCGAGAAAAGACCAAGGAGGTCCCTCAACTCGTGCTACGTCGACTCCGACTACGACGACCACAGCGGCTCCCACCTCTCCATCGAGACCGACTCCGACGAGCCACTGAGGGGCGAGTTCAAGTGCCAAATATGCGACAAGGCGTTCCACTCGAAGAAGAGCGTCGCCGCGCACACCAAGGTGCACTCCAGAAGGTCGTTGAAGGACGCCGCCGAGAGCGCCCCAGTGCCGGCGGCCGAGCCCGAGACGACGGTGGACGCGTTGGACGCCGAAGACAAACTGACCTGCGAGCGATGCGATAGGACCTTCAAACTGAAGATTATGCTCAAACGTCACATGGAGACCTGCCAAGTGACCCCGCCCAAGTCCGGCATAAAGGAGCTACTGGTCACCTTGCAACCGATCGACGCGGAGACCGCACTGCCGAAGCGGTTGAACTGCGAAATGTGCACGTCCAACTTCAAGAACATTGAGAACCTGGAGAAGCACATGAGGGTAGTGCACGCGGCGGTGTTGAAGCGGAACAGCTCCGCCGGCCCGGACAACGGCAAGGTCGCCGTCCCCTGCTACTACTGCGGACAGCGCTTCGACGACTACTACCGCCATGGCGCTCATTTCGAGAGCTGCAGCAAGAAGGACCGACTCGGTAACATGCACTTCGAGCCCCGGTGCAACAAGGGCGAGACCAGCTCCAGGGAGCCGTTCTTCGAGTGCCGCATATGCAGCAAGAAGTTGGCGACGCAGGACCAACTGATCACCCACTTGGCCGCGCACATGTCGAATATAGACGACGGCGACGTCGCCGATGAGGGGGCGGGACAAGCGGACGACGACGTCTCCGTATCCTCGATCTACAGCAACGCGAACGTGCCCAGCGGCCCGCTGAAGTGCAGCATGTGCGACAAGCGGTTCACGTACAAGAAGGCGCTAGTCAGCCACGAGCAGCGCCACCGCTCCGGCGAGCTGGAGGTGAAGACGGAACCGCCCGAGCTGAACAACTCCGAAACATTGCTGAACGAGACCGACCGCCAGTCGGACACGGATTCCAGCCAGGAGGACGGCGACGACAACACGTGCGACATCTGCGAGAAGCAGTTCTCCTACAGGCGGCTGCTGCTGCACCACAAGCGCACCAAACACAACATGAGCTCCGGCACAAAACGCGCGAAGATCAACCTCAAGAGCTGCACGGTGCGCTGTCTGATCTGCGACGTCGAGATGAAGGTGAGCGCGATCAACGAGCACAACCAGAAGCACACGTCGGTGAACGTGAAGCCGCGCAACCTGTACACGTGCGCCGAATGTGACCAGCGCTTCAAGAGCTGCAGCGCCCTGGCGAACCACATCAAGCTCGTGCACAGACTGAAGCAGCCGCAGGCGCCTAAGCTGGAGGGCGCCGACCTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGTCGCGGACCAGAGTCACAACGGCCCCGGGTCGGTTCCGCCGGAGATGGGGGGCGGGCCGCTGGTCAACCTGGCCGGCTTCACCTGCCCCATATGCGGCAAGCAGATGCCCACGCTCATATCGCTGAAGCGCCACGTCAACTGGCACTCCAACGTGGGCAACAGCATGGAGAAGCAGTTGGAGTGCTTCGTCTGTAAGGAGACATTCCGGTTCCAATGCCACTACCGGCTGCACATGCGCCAGCACTACAAGGACCCCAACCTGGATCCGGCGCTACTGACATGCAACATCTGCAACCGTCGTAGCAAGCACCTGCGCGCCGCACAGGCCCACATGAACTACCACAAGCAGACGCGTTTCAAGAACAAGGACTACCAGTGCTCCATTTGCAAGCGGATGTTCCAGTTCAGGAAGGTCTACCTGTCCCACATGGCGATTCACTTCAAACGCGGCGAGAGCGTAAACAACACGGTCGTCGGCAGCGTGCTCCCTAACACAGCCGACAAGACGGTGTTCGACGGAACCCACACCTGCCACCACTGCGGGAAGGTCTGCGACTCTGAGGTCTCCCTCAAACACCACATCATCTGGCATAAATCCAAGACCTCGCTCTTCGGCGCTCGCCACGAGTGCCACATCTGTGGCGTCCAATTCACCAACAAGAAACGGCACGAGCTCCACATTAGGACCCACTACGAGGACGAAAACGGCCCGTACAAATGCACGGTATGCGGCAAGGGTTTCATCGACGAAGACTACCACCGGCGGCACGTAAAGGGCCACAACTTCGACCACCAGTCGCACAAAACCCGGATAGCGAATCTCAGGAAGGACAAGGTGAAGTGCCCGATTTGCGCCCGCTTCTACCCGGACCTGGCGAAGCTCATACGCCACTTAAGGCGCACGCACCCCGAGAGCAAAATGATCAAAGCCGACCCGGACGCACCGGCCCAGAACTACTTTTCGTGCAAACTCTGCGCTAAGGTGTTCCTCGACGAGAGGCGACTGCAGCATCACGAGGAGGCGCACCTAAGAAAGCCGGAGTTCTTCAAATGCAAGTTCTGCGGCAAGAAAACCATCTCTCTGAAGAACCACCGGATCCACATCAAGGCCCATCTAACGCAGAAGTACATTGATGAGCCGCTGAAATGCATGCACTGCGACGAGACCTTCACGAGGGGGTACGACCTGCACTATCACCTGCGGGATGCCCACGACATCACCGAGAGCTGGATCGCAGAGCGGACAGAGAAGACGCTGAACGGCCCCCTGAAAGAGCTCCAGTGCTCCATCTGTCTGAAAGTGTTGGCGAGCAAAGGCAACTTCGAGCGGCACATAGACTACCACAACTCGCTGAGGTGCAACTACTGCTTCGATTACTTCAGCTCGCTCCGGTTCCTGGAGGGGCACTTGGCGTTCAGCTGCGAGAAGAAAAAGCTGGTAGGCGACACCGAGATCTACCCTAAGAAGGTGAAATGCCACGTATGCTACAAGGCTTTCCACCTGCAAGTGAAATTGGACTGCCACTTGCGCACGCAGCACGGCGTCAAAGTCTGCAAGGAGGTGTCGGAGGGCAAGAAGGAGATAGTTTGCGATTACTGCTTCAAAGTATTCGAGAACGAGTACGCTTTGAGCACGCATAAGATATACCACCGCACCATCGGCTACTACGGTTGCATGTACTGCAACAGGAAATTCAACACGATAACGCTCTACAACAAGCACAAGAACCACCACTTGTCGCAGCACAACGTCGACAATCCGACCAAGTGTGAGCACTGCGACGAGACCTTCGTCGCGTTCAGGGAGATGATTTACCACATGAGGGACGTCCACGGCGACGACAAGGAGTGGATAGTGCTGCCAAAGGAATCCACCGAGGAGAAGTGCCACATCTGCAACAAGGTCTTCTTCAACCTCCACAAGCATCTCGCGTACCACGAGGAGAACCGTTGCAAGAAGTGCTCCGAGTACTTCTACTCCCAGCTGGACTACGACAACCACTTGTGCGCGATAGAGAGCGACGAGGAGGTGGACGAGAGCAACGAGAGCGACCTGCGGCCCAGGTACGAGGAGTGCTCGTTCTGCTTCAAGCCCACCACCAAGAAGAACTCGCAGCGCAAACACGACCACATACACCGCGTGTCTGGCTCGATATCGTGCCGCTTCTGCCCGCACAAGTTCAAGACGATCGACGCGTTCAACATACACGCGTTCTCGCACAGGAGCAGGAAGTACGACAAGAAGCCGATAAAGTGCCGCCGCTGCGGCGAGAAATTCGTCCGCTACGGGCCGTTCATCAGGCACATGAAGGCGGCCCACAAGTCCGCGCAGAAGATGCACTACCGCACCATGGTCAAGCCGGAGCGGTGCGCGGTCTGCGGCGGCGAGTTCCCCAACCTGCACAACCACTATCGGGCGCACCTGCAGAACCAGTGCCAGTCGTGCCGCAAATACTTCACGTCGTACAAGTCCTTCTCGATGCACGAATGCGACAGACCGGACTCCGACCCCTCCAAAGTGTTCACGTGCGACGAGGACCTGGGGCAGCTGATCAACTCGTACGTGCCCAAAGACGAGAAAGACGACGAAAAGTTCTACGGGCACAGCGACGACGAGGAGGAGGCGGCGGGGCCAGGGTACGCGACTCAGGACGAGGAGAGCCAGAACTCGTCGGACGCCAACCTCCACATGATGGTCCACACGCCCATAATATCGGACGTGCTCTCCCTATACGAGGCGAAGGACGAAAAACGGACAATGATCCCGAACAAAGTGATCAACTTGACGGACGACGAAGAGATCCTGACCGTTATAACAATAGACGATTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNNLQLAEMVMECARVKVHEGDGLPDKICSECIQKLSSAHIFKLQCERSDQELRRNYIPPPGFSNTPSPPNRQSSDSAFSNNTDVSGNNKPALEAKVTVDSRTRKRSRESVDNASSSSQSHDFRPGTTKRLAELRSSEKRPRRSLNSCYVDSDYDDHSGSHLSIETDSDEPLRGEFKCQICDKAFHSKKSVAAHTKVHSRRSLKDAAESAPVPAAEPETTVDALDAEDKLTCERCDRTFKLKIMLKRHMETCQVTPPKSGIKELLVTLQPIDAETALPKRLNCEMCTSNFKNIENLEKHMRVVHAAVLKRNSSAGPDNGKVAVPCYYCGQRFDDYYRHGAHFESCSKKDRLGNMHFEPRCNKGETSSREPFFECRICSKKLATQDQLITHLAAHMSNIDDGDVADEGAGQADDDVSVSSIYSNANVPSGPLKCSMCDKRFTYKKALVSHEQRHRSGELEVKTEPPELNNSETLLNETDRQSDTDSSQEDGDDNTCDICEKQFSYRRLLLHHKRTKHNMSSGTKRAKINLKSCTVRCLICDVEMKVSAINEHNQKHTSVNVKPRNLYTCAECDQRFKSCSALANHIKLVHRLKQPQAPKLEGADLADFCEVVVTKAEPLVADQSHNGPGSVPPEMGGGPLVNLAGFTCPICGKQMPTLISLKRHVNWHSNVGNSMEKQLECFVCKETFRFQCHYRLHMRQHYKDPNLDPALLTCNICNRRSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRMFQFRKVYLSHMAIHFKRGESVNNTVVGSVLPNTADKTVFDGTHTCHHCGKVCDSEVSLKHHIIWHKSKTSLFGARHECHICGVQFTNKKRHELHIRTHYEDENGPYKCTVCGKGFIDEDYHRRHVKGHNFDHQSHKTRIANLRKDKVKCPICARFYPDLAKLIRHLRRTHPESKMIKADPDAPAQNYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKAHLTQKYIDEPLKCMHCDETFTRGYDLHYHLRDAHDITESWIAERTEKTLNGPLKELQCSICLKVLASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLVGDTEIYPKKVKCHVCYKAFHLQVKLDCHLRTQHGVKVCKEVSEGKKEIVCDYCFKVFENEYALSTHKIYHRTIGYYGCMYCNRKFNTITLYNKHKNHHLSQHNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWIVLPKESTEEKCHICNKVFFNLHKHLAYHEENRCKKCSEYFYSQLDYDNHLCAIESDEEVDESNESDLRPRYEECSFCFKPTTKKNSQRKHDHIHRVSGSISCRFCPHKFKTIDAFNIHAFSHRSRKYDKKPIKCRRCGEKFVRYGPFIRHMKAAHKSAQKMHYRTMVKPERCAVCGGEFPNLHNHYRAHLQNQCQSCRKYFTSYKSFSMHECDRPDSDPSKVFTCDEDLGQLINSYVPKDEKDDEKFYGHSDDEEEAAGPGYATQDEESQNSSDANLHMMVHTPIISDVLSLYEAKDEKRTMIPNKVINLTDDEEILTVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923027;
- 90% Identity
- -
- 80% Identity
- -