Lser002967.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- stc
- Assembly
- GCA_015586225.1
- Location
- NW:92570-101302[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7 1.2e+04 -3.9 1.6 15 19 251 255 250 255 0.81 2 13 0.05 3.6e+02 1.0 0.2 4 10 284 290 283 291 0.95 3 13 2.2e-05 0.16 11.7 16.1 4 19 298 313 296 313 0.91 4 13 1.8e-07 0.0013 18.4 13.2 3 19 351 367 349 367 0.91 5 13 2.4e-06 0.017 14.8 14.8 1 19 407 425 407 425 0.98 6 13 1.3e-05 0.093 12.5 14.0 4 18 473 487 466 488 0.86 7 13 0.0059 42 4.0 9.3 1 11 528 538 528 539 0.96 8 13 2 1.4e+04 -4.3 1.1 4 10 543 549 543 549 0.58 9 13 4.1e-10 2.9e-06 26.9 15.5 1 18 555 572 555 573 0.97 10 13 1.5 1e+04 -3.7 0.9 6 10 602 606 602 607 0.81 11 13 2 1.4e+04 -7.9 10.4 10 18 620 629 609 630 0.76 12 13 5e-08 0.00036 20.2 14.7 1 16 666 681 666 691 0.92 13 13 2.8e-07 0.002 17.8 13.5 1 19 698 717 698 717 0.96
Sequence Information
- Coding Sequence
- ATGGAAAGATTTTCTCGAAATTTACAAGAGAAACATCAAAATAATGATTCAGCCTCAAATTCGAATTCTTCCACTCCTTCGTTGACAATGAATGGTAGAGGAGAACGtgaacagcagcaacaacaacagcaaccggGGGTATCTAAAGCAACAGGAGCTTTTAGTAAAAATCAACGTGGTTCCATGAATGGCAACAATAATGAGAAACAAAGAAATCAAGATGGCCAAGATAAGTCTGGTggtgaaaaaaacaatttcaataaaCGTTATCAGAATGGCAGACGTTCTCAAGATTATGTAGAACGTGAGGAACGTTATGAACGTTACGTGGATCGTGGTGAACGTTCTGAACGTGGCCATAATCAACGTAATCAGCAGCGCAATGACTATCATCAACGTTATGATAATTATCGCAGTAATAAGAGACGTGATGATTGGAATCGTAATCGTGATCGTATAAATGGTTTTCGTGTAGAGGAAAAATACTCCAATGATAATGGCAAAGATAGTCCTTTGGCATCGCCTGAAAAGAGGTCTCCTAAAAAGTCTTATGACAAGGAAAATGAGAAGCTTTcacaaagagaaaaattaataaGAGATATTGAAACTAGACGTCTGGAATGTTTAGTTTGTGTAGAGCCTATTAAGGCTCATCAGAGTGTTTGGTCTTGTCATAATTGCTATCATATACTACATTTGCAGTGCATAATAAAATGGGCCTCTTCCTCGAAATCCGACGACGGCTGGCGTTGTCCTGCCTGTCAGAATGTAGAAAAAGAAGTTCCTCGTGATTACTACTGTTTCTGTGGTAAATTAAAGAATCCCACAAATAATCGTCAAGACATAGCACATTCTTGCGGTGAAGTATGTGGACGTGTAGAGGGCTGTGCTCATGCCTGTACTTTGCAGTGTCATCCCGGTCCCTGTCCTCCTTGTCAGGCACAGGTAAAGCGTGAATGTGGTTGTGGCAAAACCTCGAAAATTATGCAATGCTGCTTAAAGGAAACCATAGAATGTGATTCCACTTGTGAGAAACTATTGAATTGTGAATTGCACACTTGTCAGGAGAAATGTCATGAGGGCAAATGTCCCGCCTGTAAAGAGAAGGTTGATCAAAAGTGTCACTGTGCTAAACAAGAAAGACAAGTTACTTGTACACGCGAGTCGCATGACAAACACAACTATTCATGTGGTAAAATTTGTGGCAAAAATTTAACATGTGGCAATCATCAGTGTAAAGACAGTTGCCATCCCAATGAATGTAGACCCTGTAAATTGAGTCCTGACAATGTCACCTCTTGTCCCTGTGGCAAAATGCCTATTATGGCCGAACAGCGCAAATCCTGTTTAGATCCCATACCCGTTTGTGAGGGTGTCTGCggtaaaactttaaaatgtggCAAAGCTACTAATCCTCACCATTGCACGGCAAAATGTCATTTGGGTAATTGTCCTCCATGCAATAAACAAACTGCTGTCAAGTGTCGCTGTGGCCATATGGATCAAATGATAAAATGTCGCCAGCTGTCGACTAGAGCGGATGATGCTAGATGCAAGAAACGCTGCACGAAAAAACGTTCCTGTGGCAAGCACAAATGTAATCAAGAGTGCTGCATAGACATCGATCATTTCTGTCCACTGCCTTGTAATTATACGCTCTCTTGTGGCAAGCACAAGTGTGATCAACCCTGTCATCGCGGCAATTGTCCACCTTGTTATCGTTCCTCTTTCGAAGAGCTCTTCTGTGAGTGTGGTGCTGAAGTTATCTATCCCCCCGTGCCCTGTGGCACTAAACGTCCCGTTTGCAAACGCCCCTGTTCGCGTAAACATCCTTGCGATCATCCGCCACAACATAACTGCCATTCAGCAGCCACATGTCCTCCCTGTATGATGTTCACTACGAAATGGTGTTTCGGTCACCATGAACAACGCAAAACGATACcctgttctcagcagagttttTCCTGTGGTTTGGCCTGTAATAAACCTTTGCCTTGTGGTCGCCACAAGTGCATTAAGACTTGTCATGAGGGTCCGTGTCAAGTACCCGGTGAGATTTGTAAACAAAGTTGTACTACTGCTCGTTCTACTTGTGGGCATAAGTGTATGGCTCCGTGTCACAATGGTGATTGTCCTGAGAATCCCTGTAAAGAGATGGTTGAAGTTCAATGCGAATGTGGCAATCGCAAACAAATGCGCACTTGTGCCGAATTGGCACGTGAATTCAGTCGTATTGCTACTGCCCAATTGGCCTCATCCATGGCTGAAATGCAACGTGGCAACTATATGGAACTATCGGAAATTTTAGCTCCAGTCAAACTCTCTGGTAAATCTACTAAAACTTTAGATTGCAACGAAGAATGTCGCCTACTCGAACGTAATCGTCGCTTGGCTATAGGTCTACAAATACGTAATCCTGATTTGCCACAAAAACTCTTAACAAAATATTCTGATTTTATACGTAACTTTGCTAAACGTGATCCAGCTTTGGTCAAGTCCATACATGAAGCTCTAACCACTCTAGTGAAATTGGCCAAAGAAAGTAAACAAAAGTCACGTTCCCACTCGTTTCCCACCATGAATCGTGAAAAACGTCAGCTAGTACATGAAATGTGTGAAATGTTTGGTGTCGAATCAGTGGCCTATGATGCTGAACCTAATCGTAATGTGGTAGCTACTGCTTTTAAGGATAGATCTTGGCTTCCTGCTACTAGTATTATGGAAGTAATGGCTCGTGAGGCTGGTCAAAGACGTGTACCAGTACCGAGTAATAATGCCTGGGGTTTAAAGAGATAA
- Protein Sequence
- MERFSRNLQEKHQNNDSASNSNSSTPSLTMNGRGEREQQQQQQQPGVSKATGAFSKNQRGSMNGNNNEKQRNQDGQDKSGGEKNNFNKRYQNGRRSQDYVEREERYERYVDRGERSERGHNQRNQQRNDYHQRYDNYRSNKRRDDWNRNRDRINGFRVEEKYSNDNGKDSPLASPEKRSPKKSYDKENEKLSQREKLIRDIETRRLECLVCVEPIKAHQSVWSCHNCYHILHLQCIIKWASSSKSDDGWRCPACQNVEKEVPRDYYCFCGKLKNPTNNRQDIAHSCGEVCGRVEGCAHACTLQCHPGPCPPCQAQVKRECGCGKTSKIMQCCLKETIECDSTCEKLLNCELHTCQEKCHEGKCPACKEKVDQKCHCAKQERQVTCTRESHDKHNYSCGKICGKNLTCGNHQCKDSCHPNECRPCKLSPDNVTSCPCGKMPIMAEQRKSCLDPIPVCEGVCGKTLKCGKATNPHHCTAKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHFCPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELFCECGAEVIYPPVPCGTKRPVCKRPCSRKHPCDHPPQHNCHSAATCPPCMMFTTKWCFGHHEQRKTIPCSQQSFSCGLACNKPLPCGRHKCIKTCHEGPCQVPGEICKQSCTTARSTCGHKCMAPCHNGDCPENPCKEMVEVQCECGNRKQMRTCAELAREFSRIATAQLASSMAEMQRGNYMELSEILAPVKLSGKSTKTLDCNEECRLLERNRRLAIGLQIRNPDLPQKLLTKYSDFIRNFAKRDPALVKSIHEALTTLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAFKDRSWLPATSIMEVMAREAGQRRVPVPSNNAWGLKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01315169; iTF_01313436;
- 90% Identity
- -
- 80% Identity
- -