Lser011995.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:206039-208044[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.7e-05 0.32 10.8 0.0 4 49 253 299 251 301 0.77 2 4 0.0021 10 6.0 0.2 20 45 443 468 436 476 0.86 3 4 0.017 80 3.2 0.1 21 43 472 494 467 499 0.88 4 4 0.00059 2.8 7.8 0.4 21 43 500 522 495 533 0.83
Sequence Information
- Coding Sequence
- atgaataaaataaacaataaatgtcGGACGTGTTTCAATGAGTCCACCAAAGGATTACAATCTCTAACAAAAAAGACTTCAACTGACGAGAATAATCAGCAAAAATCCTATGCAGAATTACTCAATGAAGTGGCCAATATTAAtatAATGCAAGACAAATGTTCTAAAATGCCTCAGGCCATTTGTGGCCTTTGTTCCAAGAAACTGAAAGCCGCCCATGCTTTCGTCCAGCAGGCTCAGGAAGTCAATGAAAAGCTTTATTCCATGTTTTTACAAAATCCTCAGTCGGTGGATAGCGTTGGTGTTGGAAAGTCTTCGGATTGTTTACAAGAGGTTCAAATCGATATAGCGGCATGTGCTGAAATTAAAATGGAACATGATGATGTGGGTGACAGTAGTGATGGTGTGGTGGGTGTTGATGTTATGATGGCTGAGCCAGAATTGAAACAGGAGAATGCAGAAGAAGATGCCTTAGCTGTTAATTTTACGAAAAGTGAAGATAATTTTGAAGAAGGcaATGACCTAAAAGATTCTTTAGATGTAACATACCCCAATGTTTCTCTAACAATCCTCACGTCTGACACTGAAGACAACATTCCCAATATTCTGGAGCAAACTATGGACACTTCCGATAACAATAGCAATATAAATGAAAGATCATGCCATTCGGCTagtgatgataatgatgacaaTGAATGGTTAAACGAATCAAATAATTCCACAAAAAAATcgctaaaaaagaaaacatcacctacgaaaaaacgtaaaaaatcaCCTAAAGCTGAAGAAACTAAAGACAAAAATGAAGATGAATGGTTGCAGGTGAAATGTAATGATTGTGATAAAATATTTGACAATTCACGGCTATTAAATCGTCACCTGCGTTTAAATCATGTACCAGATGAGCTGAAAATACAATGTCTTCATTGTGAGGCCAAATTCAGTCGTCGCCATAATATGTATGCTCATATGCGTCGTATacataaaacagaaaatttagaAGAGTTCCAAATACAACCGAAAAAATCCAACGCCGCGAAGCAGTATGCCTGTCAGCAGTGTACACGTTCATATACCAATAAATATAAGTTAATAGCTCATGTCAATAGTCATCATAATCCCGATAATAAAACCACTGCCCCTAAAGAGAAGGTACTACAGCCGAAAAAACGTTTCTTGTGTACACTTTGTGGTTTAAAGTTCGATAGTGAGGGTAATTTGAATATTCATTTTCGGCGGCATACTGGTGAAAAACCCTATAAGTGTGAATTTTGTGATCGAGCCTATCCTAGACTCTACGATGTACAAGTACATCGTCGCACGCATACCGGTGAGAAGCCCTATCAATGTACCCTCTGCGAAAAGACCTTTAGACGATCGAACAAATTAAAGATTCACATGCGTACGCACACTAACGAACGACCCTATAAGTGTACGCAGTGTGAGAAGGCTTTTAAACAATCGAAAGATTTGAATATACACAAACGTACGCATACCGGCGAGAGACCCTATAAATGTGCCGTGTGTCAGAGTACATTCACCCAGAGTAATTCGTTGCGTTTACATCAAATTAAACAACAGCATTTGGAAAAGGTGAAACCAGTTGAAGATTTGCCCACGACAATGACATTTATGTGTCAGCAGCCAACATaa
- Protein Sequence
- MNKINNKCRTCFNESTKGLQSLTKKTSTDENNQQKSYAELLNEVANINIMQDKCSKMPQAICGLCSKKLKAAHAFVQQAQEVNEKLYSMFLQNPQSVDSVGVGKSSDCLQEVQIDIAACAEIKMEHDDVGDSSDGVVGVDVMMAEPELKQENAEEDALAVNFTKSEDNFEEGNDLKDSLDVTYPNVSLTILTSDTEDNIPNILEQTMDTSDNNSNINERSCHSASDDNDDNEWLNESNNSTKKSLKKKTSPTKKRKKSPKAEETKDKNEDEWLQVKCNDCDKIFDNSRLLNRHLRLNHVPDELKIQCLHCEAKFSRRHNMYAHMRRIHKTENLEEFQIQPKKSNAAKQYACQQCTRSYTNKYKLIAHVNSHHNPDNKTTAPKEKVLQPKKRFLCTLCGLKFDSEGNLNIHFRRHTGEKPYKCEFCDRAYPRLYDVQVHRRTHTGEKPYQCTLCEKTFRRSNKLKIHMRTHTNERPYKCTQCEKAFKQSKDLNIHKRTHTGERPYKCAVCQSTFTQSNSLRLHQIKQQHLEKVKPVEDLPTTMTFMCQQPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00260022;
- 90% Identity
- iTF_00921759;
- 80% Identity
- iTF_00922315;