Basic Information

Insect: Lucilia cuprina
Gene Symbol: -
Assembly: GCA_001187945.1
Location: JRES01000088.1:255753-275378[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.8e-05 0.062 13.1 0.0 4 49 248 294 246 296 0.86

2 4 0.0029 10 6.0 0.2 20 45 438 463 431 470 0.86

3 4 0.024 84 3.1 0.1 21 43 467 489 463 494 0.88

4 4 0.00052 1.8 8.4 0.9 21 44 495 518 489 532 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.8e-05	0.062	13.1	0.0	4	49	248	294	246	296	0.86
2	4	0.0029	10	6.0	0.2	20	45	438	463	431	470	0.86
3	4	0.024	84	3.1	0.1	21	43	467	489	463	494	0.88
4	4	0.00052	1.8	8.4	0.9	21	44	495	518	489	532	0.74

Sequence Information

Coding Sequence: atgaataaaataaacaataaatgtagGACGTGTTTCAATGAATCCACCAAAGGATTACAATCTCTAACAAAAAAGACTTCAACTGATGAGAATAATCAACAAAAAACCTATGCAGAACTACTCAATGAGTTGGCCAATATTAATATAATGCATGACAAATGTTCCAAAATGCCTCAGTCCATATGTGGTCTTTGTTCCAAGAAACTGAAAGCAGCTCACGCTTTCGTCCAGCAAGCTCAGGAGGctaatgaaaaactttattccATGTTTTTACAAAATCCTCAGTCGGTGGATAGGGTTGGTGTTGGAAAGTCATCGGATTGTTTGCAAGAGGTTCAAATCGATATTGCAGCATGTGCTGAGATTAAAATGGAACATGATGATGTGGGTGACAGTAGCGATGGTGTGGTGGGTGTTGATGTTATGATGGCAGAGCCAGAGATGCTAAAGAAGAGTGTACAATTGAAAGAGGAGAATCCAGAAGAAGATGCTTTAgctgtaaattttacaaaaaATTCTTTAGATGTAACATACCCTAATATTTCTCTAACAATCCTCACGTCTGACACTGAAGACAACATTCCAAATATTCTGGAACAAACTATGGACACTTCCGATAACAATAGCAATATAAATGATGGATCATGTCATTCCGCTACagataataatgatgacaatGAATGGTTAAATGAATCAAATAATTCCACAAAAAAATcacgaaaaaagaaaacatcgcctacgaaaaaacgtaaaaaatcaCCTAAAACTGAAGAAACTAAGGACAAAAATGAAGATGAATGGTTACAGGTGAAATGTAATGACtgtgataaaatatttgataattcaCGGCTATTAAATCGTCACCTGCGTTTAAATCATGTACCGGATGAACTGAAAATACAATGTCTCCATTGTGAGGCAAAATTCAGTCGTCGCCATAATATGTACGCTCATATGCGTCGTATACATAAAACCGAAAATTTAGAAGAGTTTCAAATACAACCGAAAAAGTCCAATGCCGCGAAGCAGTATGCCTGTCAACAGTGTACACGTTCATATACCAATAAATACAAGTTAATAGCTCATGTCAATAGTCATCATAATCCCGACAATAAAAACACTGCCCCTAAAGAGAAGGTTCTACAACCGAAAAAACGTTTCTTATGCACACTTTGTGGTCTAAAGTTCGACAGTGAGGGTAATTTGAATATTCACTTTCGCCGGCATACTGGTGAAAAACCCTATAAGTGTGAATTTTGTGATCGAGCCTATCCTAGACTCTACGATGTACAAGTACATCGCCGCACACATACCGGTGAGAAGCCCTATCAATGTACCCTCTGCGAAAAGACCTTTAGACGATCGAACAAATTAAAGATTCACATGCGTACGCACACCAACGAACGACCCTATAAGTGTACGCAGTGTGAGAAGGCTTTTAAACAATCGAAAGATTTGAATATACACAAACGTACGCATACCGGCGAGAGACCCTATAAATGTGCCGTGTGTCAGAGTACATTCACCCAGAGTAATTCGTTGCGTTTACATCAAATTAAACAACAGCATTTGGAAAAGcgtaatttcaacaataaacaacaactgCTAGCGAGTTAG
Protein Sequence: MNKINNKCRTCFNESTKGLQSLTKKTSTDENNQQKTYAELLNELANINIMHDKCSKMPQSICGLCSKKLKAAHAFVQQAQEANEKLYSMFLQNPQSVDRVGVGKSSDCLQEVQIDIAACAEIKMEHDDVGDSSDGVVGVDVMMAEPEMLKKSVQLKEENPEEDALAVNFTKNSLDVTYPNISLTILTSDTEDNIPNILEQTMDTSDNNSNINDGSCHSATDNNDDNEWLNESNNSTKKSRKKKTSPTKKRKKSPKTEETKDKNEDEWLQVKCNDCDKIFDNSRLLNRHLRLNHVPDELKIQCLHCEAKFSRRHNMYAHMRRIHKTENLEEFQIQPKKSNAAKQYACQQCTRSYTNKYKLIAHVNSHHNPDNKNTAPKEKVLQPKKRFLCTLCGLKFDSEGNLNIHFRRHTGEKPYKCEFCDRAYPRLYDVQVHRRTHTGEKPYQCTLCEKTFRRSNKLKIHMRTHTNERPYKCTQCEKAFKQSKDLNIHKRTHTGERPYKCAVCQSTFTQSNSLRLHQIKQQHLEKRNFNNKQQLLAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260022;
90% Identity: iTF_00921582; iTF_00922575; iTF_00922315;
80% Identity: iTF_00921582;