Lcup012896.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- pnr
- Assembly
- GCA_001187945.1
- Location
- JRES01001605.1:848474-924422[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-18 1.1e-14 53.3 3.2 1 34 197 229 197 231 0.97 2 2 7.3e-19 1.7e-15 56.0 6.2 1 35 254 287 254 288 0.98
Sequence Information
- Coding Sequence
- atgatgatgttagAAAATGAAATGGAATTAGAATGGAGAACATCTTTAACAAAAACGTCAAACTCCGATCAACATTCATCTTCAGCTGATATATCTCTTATGCATCAGGATTTAGCTTCGCCCAACACTGTGTCGGCCAATTATCAACTAGCTCTGGGCCAAAGACATTCGTCGGTGGGTAATTTGGAACATCAACAGGATTTCTCCTCGTACACTGCTAAAATGTATCATTCCTCAGCCGGTTATCCTGATTTAAGCGGCAGCACCAGTGGCTCTGGGGTTAGTTCGTATCATCAACAGGCTGCCGCAGCAGCTGCTACCGTCAGTGCTCCCGTCTATGTTCCCTCGAATAGAGCCCTAACCAATAGTCAATATCAACATGTTGCTGCTCATTTTGGTACTGCTGCTGCTCAGAATGCCTGGACATCGGATAGTTTTGGTACTGCTCATGCCCAATTACCTCCACAATTCTATACACAGAATGCCGTTATGATGGGTTCATGGAGAGCGGCCTATGATCCCACCGGTTTTCAACGTTCTTCACCCTACGATAGTGCTATAGATTTTCAATTTGGTGAGGGTAGGGAGTGTGTAAATTGTGGTGCCATTAGCACCCCACTATGGAGGCGAGACGGTACCGGTCATTATTTGTGTAACGCTTGCGGATTGTATCATAAAATGAATGGCATGAATAGGCCGTTGATCAAGCCAAGCAAGCGATTGGTGAGTGCAACCGCCACTCGTCGCTTAGGTTTATGCTGCACAAATTGCGGTACACGTACCACAACACTATGGAGACGTAACAATGAAGGAGAACCTGTATGTAATGCCTGCGGCTTATATTTCAAATTACATGGTGTTAATAGACCCTTAGCCATGCGTAAAGATGGCATACAGACAAGAAAAAGGAAACCCAAGAAATCGGGCAGTACTACCGAAAATGGCAAAGAGATCAAAGATGACGATCTTAAACCTTCTTTAGGCTTAGAACGCCATAGTCTTCCCGGTTCATTAGCTTCAAAACTACAAAATGATTTAGCTGTCAAATCGGCTAGCTCATCATCGGCCTTGCATAATTTAAGCCTGGGTTCTGCTACATCTGCCTTACATAGTTCTTTAAGCCATCATATGCATTTGCCACATACTTCTGCCCAACAGACGAGGTTATTAAATAACGTGAGCTCACACACCACCTCCGCCCACATAGGTTCCTCTACCAATACCTCCACAACAAATGGCAATACATCGCACAGTAATAACTTGTATTCACCTTCAGCTCTAGCTGCCCAAAGTAATTTGAGTCATTCACAGTTGTCGGGTTCAGCTTTTGGTACACAAAAATATGAACATCTATTGGGTTCCAGTAATGCTCTATCAAATGGTTTATCACCTTCCAGTTCAGCCGGCTCCAATTATCATGCCCATCATTTACATCACCATCATCATGCAGCAGCTGCCGCTCATCATGCTGCCTCGGCAgctcatcaccatcatcatcatcactcaCCTTCGTTGTCGCAACATGTACCCACCTCAGCGAGTAGTGGTGGCAGTTTAGGTGGTTATAGTGTTAAATCCGAAACAAATGCCACCAACTATGATTATGTTAATAATTGCTACTTTGGTTCTTCGTTTGGAGCCTTAGGTGGTTCTACTGGTTCTTCATCGGGCATGCATGGTGCTACTGCTTCGGATATGGCCGGTGTATATCATCATCAGCACAATGTTATACAGGCAGCCAAACTAATGGCCACCTCTTAA
- Protein Sequence
- MMMLENEMELEWRTSLTKTSNSDQHSSSADISLMHQDLASPNTVSANYQLALGQRHSSVGNLEHQQDFSSYTAKMYHSSAGYPDLSGSTSGSGVSSYHQQAAAAAATVSAPVYVPSNRALTNSQYQHVAAHFGTAAAQNAWTSDSFGTAHAQLPPQFYTQNAVMMGSWRAAYDPTGFQRSSPYDSAIDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVSATATRRLGLCCTNCGTRTTTLWRRNNEGEPVCNACGLYFKLHGVNRPLAMRKDGIQTRKRKPKKSGSTTENGKEIKDDDLKPSLGLERHSLPGSLASKLQNDLAVKSASSSSALHNLSLGSATSALHSSLSHHMHLPHTSAQQTRLLNNVSSHTTSAHIGSSTNTSTTNGNTSHSNNLYSPSALAAQSNLSHSQLSGSAFGTQKYEHLLGSSNALSNGLSPSSSAGSNYHAHHLHHHHHAAAAAHHAASAAHHHHHHHSPSLSQHVPTSASSGGSLGGYSVKSETNATNYDYVNNCYFGSSFGALGGSTGSSSGMHGATASDMAGVYHHQHNVIQAAKLMATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313418;
- 90% Identity
- iTF_00922578; iTF_01174739; iTF_00742435; iTF_01166244; iTF_01166243; iTF_01377131; iTF_00655757; iTF_00436142; iTF_01177477; iTF_00901143; iTF_00900205; iTF_01259745; iTF_00760657; iTF_01427953; iTF_01194930; iTF_01261556; iTF_01374632; iTF_01075041; iTF_00998214; iTF_00045799; iTF_00200418; iTF_00259440; iTF_00260338; iTF_01138631; iTF_01237320; iTF_01236323; iTF_01238224; iTF_00893527; iTF_01400023; iTF_01202136; iTF_01399130; iTF_01162752; iTF_00976105; iTF_00350665; iTF_01313418; iTF_01315151; iTF_01314332; iTF_01315994; iTF_01398096; iTF_00717370; iTF_00371807;
- 80% Identity
- -