Chom001033.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- pnr
- Assembly
- GCA_004302925.1
- Location
- PYHX01002571.1:1154778-1156990[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-18 1.2e-14 53.5 3.2 1 34 135 167 135 169 0.97 2 2 5.5e-19 1.9e-15 56.1 6.2 1 35 192 225 192 226 0.98
Sequence Information
- Coding Sequence
- ATGCAACAGGATTTGGCTTCACCTAACACTCTAAAATGTATCCATTCGACGGCGGGTTATCCCGATTTAAGTGGCAGCACTTCCGGCTCTGGTGTCAGTTCTTATCATCAACAAGCTGCCGCCGCTGCTGCCACCGTTAGTGCCCCTGTCTATGTACCATCCAATAGAGCTTTAACTAATAGTCAATATCAACATGTGGCCGCACATTTTGGTACAGCTGCTGCTCAAAACGCCTGGACATCGGATAGTTTTGGTACGGCTCATGCCCAATTGCCACCACAGTTTTATACACAAAATGCCGTAATGATGGGTTCTTGGCGTGCTGCTTATGATCCTACCGGATTTCAACGTTCATCGCCTTATGACAGTGCTATAGATTTTCAATTTGGCGAGGGTAGAGAATGTGTTAATTGTGGTGCTATTAGTACGCCTTTGTGGCGACGGGATGGTACAGGTCATTATTTATGTAACGCTTGCGGATTGTATCATAAAATGAACGGTATGAATAGACCGTTGATCAAGCCAAGCAAGCGATTGGTGAGTGCAACTGCAACTAGACGTTTGGGTTTATGTTGTACTAATTGTGGTACCCGAACCACAACATTATGGAGACGTAATAATGAGGGAGAACCGGTGTGTAATGCCTGtggtttatatttcaaattacatGGCGTAAATAGACCTTTAGCCATGCGCAAAGATGGCATACAAACCAGGAAAAGGAAACCCAAGAAAACCGGCAGTTCCAATGAAAATGGCAAAGAGATTAAAGAAGATGATCTCAAACCTTCTTTGGGCTTAGAACGCCATAGTTTGCCTGGTTCTTTGgcttcaaaattacaaaatgattTAGCGGTCAAATCGGCCAGTTCATCTGCATCGGCTTTGCATAATTTAAGTTTGGGTTCTGCCACATCTGCCTTACACAGTTCTTTAAGCCATCATATGCATTTACCCCATACTTCGTCGCAACAAAGCAGATTACTAAATAATGCCTCCACATCCCATAACTCCTCTTCCTCCTCCGCAGCCACATCATCTGCCTCCGCCCACTTAGGAGCCCATACAAACACATCCACTACCGCCAATGGTAATTCTACACAcagtaataatttatattcaccATCAGCATTAGCAGCCCAAAATAATTTGAGCCACTCTCAGCTAACGGGCTCAGCTTTTGGTTCTCAAAAATATGAACATCTATTGGGTTCAAGTAATGCCCTGTCCAATGGTCTATCACCCTCAAGTTCAGCCAGTTCAAATTATCATGCCCATCATTTacaccaccatcatcatcatgcGGCTGCAGCCGCTCATCATGCTGCCTCAGCGGCCCAtcaccaccatcatcatcattcacCCTCCCTCTCACAACATGTACCCACCTCAGCCAGCAGTGGTGGCAGTTTAGGTGGTTATAGTGTTAAATCCGAAACGAATGCTACCAATTATGATTAtgttaataattgttattttggtTCATCATTTGGTGCTCTGGGCGGTTCAACGGGTTCTACGACGGGTATGCATGGTGCTACTGCCTCCGATATGGCTGGAGTCTATCATCATCAACACAATGTTATACAAGCGGCAAAATTAATGGCCACTTCGTAA
- Protein Sequence
- MQQDLASPNTLKCIHSTAGYPDLSGSTSGSGVSSYHQQAAAAAATVSAPVYVPSNRALTNSQYQHVAAHFGTAAAQNAWTSDSFGTAHAQLPPQFYTQNAVMMGSWRAAYDPTGFQRSSPYDSAIDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVSATATRRLGLCCTNCGTRTTTLWRRNNEGEPVCNACGLYFKLHGVNRPLAMRKDGIQTRKRKPKKTGSSNENGKEIKEDDLKPSLGLERHSLPGSLASKLQNDLAVKSASSSASALHNLSLGSATSALHSSLSHHMHLPHTSSQQSRLLNNASTSHNSSSSSAATSSASAHLGAHTNTSTTANGNSTHSNNLYSPSALAAQNNLSHSQLTGSAFGSQKYEHLLGSSNALSNGLSPSSSASSNYHAHHLHHHHHHAAAAAHHAASAAHHHHHHHSPSLSQHVPTSASSGGSLGGYSVKSETNATNYDYVNNCYFGSSFGALGGSTGSTTGMHGATASDMAGVYHHQHNVIQAAKLMATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313418;
- 90% Identity
- iTF_00921764;
- 80% Identity
- -