Cvic002115.2
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- pnr
- Assembly
- GCA_958450345.1
- Location
- OY288232.1:40243924-40247341[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-18 2.7e-14 53.4 3.2 1 34 164 196 164 198 0.97 2 2 6.8e-19 4e-15 56.1 6.2 1 35 221 254 221 255 0.98
Sequence Information
- Coding Sequence
- ATGCATCAGGATTTAGCATCTCCCAACTCTACGTCGACAAACTATCAACTTGCCTTGGGCCATAGACATCCCACAGTTGGTAATTTGGATCATCAACAGGACTTCTCCTCGTACACAGCGAAAATGTATCATTCATCGGCCGGTTATCCCGATTTAAGTGGCAGCGCTACCGGTTCCGGTGTCAGTTCATATCATCAACAGGCTGCTGCAGCTGCCGCTACCGTAAGCGCACCCGTCTATGTACCCTCCAATAGAGCTCTAACCAATAGTCAATACCAGCATGTGGCAGCTCATTTTGGCACAGCTGCTGCCCAGAATGCTTGGACATCGGACAGTTTTGGTACCGCTCATACGCAATTACCTCCTCAATTCTATACACAAAATGCTGTTATGATGGGCTCTTGGAGAGCAGCCTATGATCCTACAGGATTTCAGCGTTCTTCACCCTATGATAGTGCTATTGATTTTCAATTTGGCGAGGGTAGAGAGTGTGTGAATTGCGGAGCCATAAGTACACCGCTGTGGAGACGAGATGGTACGGGTCATTATTTGTGTAACGCTTGCGGATTGTATCATAAAATGAACGGCATGAATAGGCCATTGATCAAGCCAAGCAAGCGATTGGTGAGTGCAACTGCCACTCGTCGCTTGGGTTTATGTTGTACCAATTGTGGTACACGTACCACAACTTTGTGGAGACGTAACAACGAGGGAGAACCTGTGTGTAATGCATGTGGCTTATATTTCAAACTGCATGGTGTTAATAGACCCTTGGCCATGCGTAAAGATGGTATACAGACTAGAAAGAGGAAGCCAAAGAAATCGGGTGGTAGCACTGAAAACGGCAAAGAGATCAAAGATGAGGaTCTCAAACCTTCTTTAGGATTAGAACGTCATAGTCTACCTGGTTCACTAGCTTCAAAGTTACAAAATGATTTAGCTGCCAAATCGGCTAGCTCATCATCAGCTTTGCATAATTTAAGTCTGGGTTCTGCTACATCTGCCTTGCATAGTTCTCTTAGCCATCATATGCATTTGCCACACACTTCTGCCCAACAAACGAGGTTATTAAATAATGTTTCGTCCTACACATCAGCCGCCCATTTAGGATCATCTACCAATACCTCTACCTCCTCAACAAATGGCAATTCTGCGCACAGCAACAATTTGTATTCACCTTCAGCTTTAGCTGCCCAAAGTAATTTGAGTCACTCGCAGTTGTCAGGCTCGGCTTTTGGAACACAAAAGTACGAACATCTCTTGGGCTCCAGCAATGCTTTGTCGAATGGTTTATCGCCCTCGAGTACGGCCAGTTCCAATTATCATGCCCATCATttacaccatcatcatcatgctGCAGCTGCCGCCCATCATGCGGCCTCGGCAGcacatcaccatcatcatcactCACCTTCGCTGTCGCAACATGTACCCACCTCAGCGAGTAGTGGCGGCAGCTTAGGCGGTTACAGTGTTAAATCCGAATCGAATGCCACCAACTATGACTATGTTAATAATTGCTATTTTGGTTCCTCCTTTGGTGCTTTCGGTGGCTCAACAGGTTCTTCATCGGGCGTGCATGGTGCTACGGCTTCAGACATGGCCGGGGTATATCATCACCAGCATAACGTTATACAGGCGGCGAAACTAATGGCCACCTCATAA
- Protein Sequence
- MHQDLASPNSTSTNYQLALGHRHPTVGNLDHQQDFSSYTAKMYHSSAGYPDLSGSATGSGVSSYHQQAAAAAATVSAPVYVPSNRALTNSQYQHVAAHFGTAAAQNAWTSDSFGTAHTQLPPQFYTQNAVMMGSWRAAYDPTGFQRSSPYDSAIDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVSATATRRLGLCCTNCGTRTTTLWRRNNEGEPVCNACGLYFKLHGVNRPLAMRKDGIQTRKRKPKKSGGSTENGKEIKDEDLKPSLGLERHSLPGSLASKLQNDLAAKSASSSSALHNLSLGSATSALHSSLSHHMHLPHTSAQQTRLLNNVSSYTSAAHLGSSTNTSTSSTNGNSAHSNNLYSPSALAAQSNLSHSQLSGSAFGTQKYEHLLGSSNALSNGLSPSSTASSNYHAHHLHHHHHAAAAAHHAASAAHHHHHHSPSLSQHVPTSASSGGSLGGYSVKSESNATNYDYVNNCYFGSSFGAFGGSTGSSSGVHGATASDMAGVYHHQHNVIQAAKLMATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313418;
- 90% Identity
- iTF_00921764;
- 80% Identity
- -