Lsta005995.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- -
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010001345.1:40708-41931[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.056 2.9e+02 1.5 0.0 26 45 66 85 60 88 0.89 2 9 0.0085 44 4.1 0.4 23 47 153 177 131 182 0.88 3 9 0.005 26 4.8 0.1 21 44 179 202 176 207 0.91 4 9 0.012 61 3.7 0.0 21 45 207 231 202 235 0.89 5 9 7.5e-05 0.39 10.7 0.1 22 45 236 259 233 267 0.90 6 9 0.00028 1.5 8.8 0.1 20 45 290 315 274 322 0.82 7 9 0.047 2.5e+02 1.7 0.2 21 44 319 342 315 350 0.83 8 9 0.083 4.3e+02 0.9 0.1 21 45 347 371 336 374 0.83 9 9 0.029 1.5e+02 2.4 0.2 21 45 375 399 371 403 0.89
Sequence Information
- Coding Sequence
- ATGAAGTATAGAGCAATAAAACCACAACTGGCAGAGCAATGCCGCGTTTGCCTGTCCAATTTGGCAGCAGATGGCAACAACACAAACTGGCCAAATATTTTCACCCACGCCAACACCGACTCCACCCAATTGCATTTTATCATCGAGGAGGTGACTGGACACCAGGTTATACATAACGAGAATTTACCTGAAAGTATATGCCCCTCATGCTTGGCAGCGGCAAATACAGCATGGAATTTCAAGCAGCGTTTGGAAAAGAGTCTTCAGCTGTTAAAGCAGAATATAACAAGCAAAGAAGATTTATTGCAAGATGATGACTTGGATTCTGCTACAGAAGACGACAGCGAAGATTCAAATTCTCCACAAACCGCAGAACGACTATTTGCCTGTTCCCATTGCCCAAAAACCTTTACCCAAAAACGCTTAAAGTATCACCTTCGCACTCACACGCGCGGTAAACCGTTCGAGTGTTCCCACTGCTCGAAAACCTTTGTCACTAGTGAATCGCTGAAAAGGCATCTACGCCTTCATACTGGAGAACGACCATTCGTATGTTCCTATTGCCTACAAAGCTTCACCCAAGCGAGCAATCTAAAGTCTCATTTTCGTACTCATACTGGGGAACGACCTTTCGAATGTTCACTCTGCTTGAAAACTTTTGCCCAAAAGAGCAGTCTGAAGTCTCACCTTCTCATTCACACCGGTGAACGACCTTTCGAATGTCCCCATTGCGCGAAAACCTTTACCCAAAGCAACAGTCTAAGGGATCACCTTCGCACTCATACGGGTGAGCGACCCTTCGAATGTTCCCACTGCACAAAAACTTTTGCCCATAAAACCACTCTAAAGGATCACCAACGCACTCATACTGGCGAGCTACCCTTCAAATGTTCTCATTGCTCGAAAACCTTTGCCGAAAGTAACAATCTAAAGAGGCACCTACGCACTCATACTGGCGAGCGACCCTTCGAATGTCCCTACTGCTCGAGAACCTTTGCCCTAAGTGGAGGTCTAAAGTCTCACGTCCGCACTCATACGGGCGAGCGTCCTTTCGGATGTTCCTACTGTTCGAAAACATTTGCCCAACGAAGCAGTCTACAGATTCACCTACGCACACATACGGGTGAGCGGCCTTATAAATGTATCCACTGCCCGAAAGCCTTCACCCAAAGCAACAGTCTAAAGATTCACCTTCGCACTCATAATAAAGAATCGAACCCTTAA
- Protein Sequence
- MKYRAIKPQLAEQCRVCLSNLAADGNNTNWPNIFTHANTDSTQLHFIIEEVTGHQVIHNENLPESICPSCLAAANTAWNFKQRLEKSLQLLKQNITSKEDLLQDDDLDSATEDDSEDSNSPQTAERLFACSHCPKTFTQKRLKYHLRTHTRGKPFECSHCSKTFVTSESLKRHLRLHTGERPFVCSYCLQSFTQASNLKSHFRTHTGERPFECSLCLKTFAQKSSLKSHLLIHTGERPFECPHCAKTFTQSNSLRDHLRTHTGERPFECSHCTKTFAHKTTLKDHQRTHTGELPFKCSHCSKTFAESNNLKRHLRTHTGERPFECPYCSRTFALSGGLKSHVRTHTGERPFGCSYCSKTFAQRSSLQIHLRTHTGERPYKCIHCPKAFTQSNSLKIHLRTHNKESNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919974; iTF_00919948; iTF_00919982;
- 90% Identity
- iTF_00919974; iTF_00919948;
- 80% Identity
- iTF_00919974; iTF_00919948;