Lsta005995.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- -
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010001345.1:40708-41931[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.33 3e+02 1.3 0.0 18 32 13 28 4 30 0.84 2 11 0.0018 1.7 8.5 1.1 18 41 129 148 120 151 0.87 3 11 0.0025 2.3 8.1 1.9 17 40 155 175 148 178 0.87 4 11 0.063 58 3.6 1.1 18 41 184 204 179 205 0.87 5 11 0.00086 0.79 9.6 1.3 1 39 196 230 196 237 0.91 6 11 0.0011 0.99 9.3 1.4 6 41 229 260 224 262 0.77 7 11 0.066 60 3.6 2.7 18 38 268 285 264 290 0.81 8 11 3e-05 0.028 14.3 3.7 17 41 295 316 282 317 0.87 9 11 0.054 50 3.8 0.1 18 41 324 344 320 346 0.84 10 11 0.058 54 3.7 1.5 18 40 352 371 337 374 0.71 11 11 0.0047 4.3 7.3 1.3 18 41 380 400 373 402 0.86
Sequence Information
- Coding Sequence
- ATGAAGTATAGAGCAATAAAACCACAACTGGCAGAGCAATGCCGCGTTTGCCTGTCCAATTTGGCAGCAGATGGCAACAACACAAACTGGCCAAATATTTTCACCCACGCCAACACCGACTCCACCCAATTGCATTTTATCATCGAGGAGGTGACTGGACACCAGGTTATACATAACGAGAATTTACCTGAAAGTATATGCCCCTCATGCTTGGCAGCGGCAAATACAGCATGGAATTTCAAGCAGCGTTTGGAAAAGAGTCTTCAGCTGTTAAAGCAGAATATAACAAGCAAAGAAGATTTATTGCAAGATGATGACTTGGATTCTGCTACAGAAGACGACAGCGAAGATTCAAATTCTCCACAAACCGCAGAACGACTATTTGCCTGTTCCCATTGCCCAAAAACCTTTACCCAAAAACGCTTAAAGTATCACCTTCGCACTCACACGCGCGGTAAACCGTTCGAGTGTTCCCACTGCTCGAAAACCTTTGTCACTAGTGAATCGCTGAAAAGGCATCTACGCCTTCATACTGGAGAACGACCATTCGTATGTTCCTATTGCCTACAAAGCTTCACCCAAGCGAGCAATCTAAAGTCTCATTTTCGTACTCATACTGGGGAACGACCTTTCGAATGTTCACTCTGCTTGAAAACTTTTGCCCAAAAGAGCAGTCTGAAGTCTCACCTTCTCATTCACACCGGTGAACGACCTTTCGAATGTCCCCATTGCGCGAAAACCTTTACCCAAAGCAACAGTCTAAGGGATCACCTTCGCACTCATACGGGTGAGCGACCCTTCGAATGTTCCCACTGCACAAAAACTTTTGCCCATAAAACCACTCTAAAGGATCACCAACGCACTCATACTGGCGAGCTACCCTTCAAATGTTCTCATTGCTCGAAAACCTTTGCCGAAAGTAACAATCTAAAGAGGCACCTACGCACTCATACTGGCGAGCGACCCTTCGAATGTCCCTACTGCTCGAGAACCTTTGCCCTAAGTGGAGGTCTAAAGTCTCACGTCCGCACTCATACGGGCGAGCGTCCTTTCGGATGTTCCTACTGTTCGAAAACATTTGCCCAACGAAGCAGTCTACAGATTCACCTACGCACACATACGGGTGAGCGGCCTTATAAATGTATCCACTGCCCGAAAGCCTTCACCCAAAGCAACAGTCTAAAGATTCACCTTCGCACTCATAATAAAGAATCGAACCCTTAA
- Protein Sequence
- MKYRAIKPQLAEQCRVCLSNLAADGNNTNWPNIFTHANTDSTQLHFIIEEVTGHQVIHNENLPESICPSCLAAANTAWNFKQRLEKSLQLLKQNITSKEDLLQDDDLDSATEDDSEDSNSPQTAERLFACSHCPKTFTQKRLKYHLRTHTRGKPFECSHCSKTFVTSESLKRHLRLHTGERPFVCSYCLQSFTQASNLKSHFRTHTGERPFECSLCLKTFAQKSSLKSHLLIHTGERPFECPHCAKTFTQSNSLRDHLRTHTGERPFECSHCTKTFAHKTTLKDHQRTHTGELPFKCSHCSKTFAESNNLKRHLRTHTGERPFECPYCSRTFALSGGLKSHVRTHTGERPFGCSYCSKTFAQRSSLQIHLRTHTGERPYKCIHCPKAFTQSNSLKIHLRTHNKESNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00920323;
- 90% Identity
- iTF_00920323;
- 80% Identity
- iTF_00920323;