Basic Information

Insect: Lordiphosa magnipectinata
Gene Symbol: -
Assembly: GCA_018904285.1
Location: JBAMBO010001276.1:40862-52335[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.13 10 7.5 1.3 3 23 283 304 282 305 0.92

2 10 0.0007 0.053 14.7 1.2 6 23 313 330 313 330 0.99

3 10 1.1e-05 0.00085 20.3 0.3 1 23 336 359 336 359 0.98

4 10 0.00056 0.042 15.0 0.4 1 23 371 393 371 393 0.97

5 10 7.6e-05 0.0057 17.7 3.0 1 23 400 423 400 423 0.96

6 10 1.9e-05 0.0014 19.6 1.8 1 23 429 451 429 451 0.96

7 10 0.08 6 8.2 0.5 2 23 460 481 459 481 0.96

8 10 6.2e-05 0.0046 18.0 2.9 2 23 487 509 486 509 0.95

9 10 2.8e-07 2.1e-05 25.4 0.7 2 23 516 537 515 537 0.97

10 10 0.00028 0.021 15.9 4.4 1 23 543 566 543 566 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.13	10	7.5	1.3	3	23	283	304	282	305	0.92
2	10	0.0007	0.053	14.7	1.2	6	23	313	330	313	330	0.99
3	10	1.1e-05	0.00085	20.3	0.3	1	23	336	359	336	359	0.98
4	10	0.00056	0.042	15.0	0.4	1	23	371	393	371	393	0.97
5	10	7.6e-05	0.0057	17.7	3.0	1	23	400	423	400	423	0.96
6	10	1.9e-05	0.0014	19.6	1.8	1	23	429	451	429	451	0.96
7	10	0.08	6	8.2	0.5	2	23	460	481	459	481	0.96
8	10	6.2e-05	0.0046	18.0	2.9	2	23	487	509	486	509	0.95
9	10	2.8e-07	2.1e-05	25.4	0.7	2	23	516	537	515	537	0.97
10	10	0.00028	0.021	15.9	4.4	1	23	543	566	543	566	0.96

Sequence Information

Coding Sequence: ATGATTTGTCGTTTGTGCTTGCGCAGCATAAATGCCAACAATGCGGTGTTCCTATTCGAGACAGATGAGACGCTGGCCGAAACCAGGCTGGTCAAGATGATAGCCAAGTTTCTGCAATTGGAGATTATGCCCGATGACAGCATCTCTACCAGCGTCTGTAGCGAATGCTGTGAACATCTGGAGGACTTCAATAGCTTCTGGCAGTTGGTGGAGCAGAAGCAGGGCACACTTAAAAAAGAGTTTCTCACTGTGGACGTGGACTGTGGAGCCATGAAATGGGCAACGGACACCAACAGTGTGGATGTGGATGTCAATATGGATGAGCTGCCGCTGATGACTGTGGAAATGGATGAGAAACCCCTGGATATGCACAATTTAACTATATTGGGTAGTGTGCTGGATGTGAAtgtggacgaggaggaggagcaggaggagCAGCAGATGTGCATTAAACAGCCAATGTCGGAATATCTAACAGATGATGAGGACGAAAAGCCAATGTTAGATGACAGTGGCAGTGAATTTGGCGAGGCTGTGGCCGTCCTAGATGACAACGACGATGAAGAGGACTCCTCCGATGATGAACCCCTGGTCAAACTGCAGCATAAACTTAAACCGAAACGCAAATACACCAAACAGAAACGCAGTCTCACTCTCTCCCAGGAGCTTAAGGATCTGTTAGACGATGGCTCTTCGCCCAGCAAGCAAAAGAAGAAATCTACCGGACCCACAGAGGTGCAAGAATCCGAACTGCAATCCGCCTTGGAACGCAAACCCAAAGGATGTTCGCGTGCCCAATTGGCCAAACGCTATGAGGAGATTATAGCCAGTTTTATGAGTGCAAATTGTGACCTGTGTGACTTTAGTGGCAAATACCTAAGCGAACTGAAGACCCATTTTCAGGAGGTTCATCATCGGGAATTCTATATCAAATGTTGTAATAAGATTTTCACCCGCGCCTGCAATCTAATGGATCACATACGCAAACATGTCAATCCCAAGCTATTTACCTGCACCATTTGCAACAAATCCCTCAACTCGCAGGATTATCTGGCCACACATATCGAAACGGTGCACAATAAGGCGGGACAAATGGGCAAAGTATTGAAATTTCCCTGTGCCAAATGTGAGCGGACGTTTAGCAGTGAACGACGATTGGCAAATCATTTGGCCAAACATGATACGGATCAATTGGAGCATAGCTGCGAAATATGCCAAAAGAGTTTCGCCAACGTTCATCGCTTGCGTCGTCACATTCAGTCCATACACGAAGATCTGCATCCCCATGTCTGCGATATTTGTGGTAAAAAGTTCAAATTTAAACCCTCATTTGAGCGTCATTTATTGGAGCATCAGGGTGTGGTGGCACCCGCCATGGAATGTCCCATTTGCGGTGTATGGCTTAAGAATGAGCATAGCTTACGTTTGCATCGATTCACGCATGATAGCACCGACACGGTGTGTCCGCATTGCTCCAAAACCTGCACCTCACGCACCGCTCTGCGTGCCCATATCAAATACGCCCATAAATTGACCACAAATCTGCAGTGCACCTACTGTGAGAAGAGTTTTAAACAACAGCGCAATCTGGAGGAGCATATGGCCATACATACCGGTCTACAGCTCTACAACTGTCCGCACTGTCCCAAGGAGTGTCGTTCACGCTCGAATATGTATGTGCACATTAAGCAGCGGCATGCAGACGAATGGCTCAAAGCCAAAATGGCACGTTCCCATAATCCGCAATTCAAACCGCTGGCCTAA
Protein Sequence: MICRLCLRSINANNAVFLFETDETLAETRLVKMIAKFLQLEIMPDDSISTSVCSECCEHLEDFNSFWQLVEQKQGTLKKEFLTVDVDCGAMKWATDTNSVDVDVNMDELPLMTVEMDEKPLDMHNLTILGSVLDVNVDEEEEQEEQQMCIKQPMSEYLTDDEDEKPMLDDSGSEFGEAVAVLDDNDDEEDSSDDEPLVKLQHKLKPKRKYTKQKRSLTLSQELKDLLDDGSSPSKQKKKSTGPTEVQESELQSALERKPKGCSRAQLAKRYEEIIASFMSANCDLCDFSGKYLSELKTHFQEVHHREFYIKCCNKIFTRACNLMDHIRKHVNPKLFTCTICNKSLNSQDYLATHIETVHNKAGQMGKVLKFPCAKCERTFSSERRLANHLAKHDTDQLEHSCEICQKSFANVHRLRRHIQSIHEDLHPHVCDICGKKFKFKPSFERHLLEHQGVVAPAMECPICGVWLKNEHSLRLHRFTHDSTDTVCPHCSKTCTSRTALRAHIKYAHKLTTNLQCTYCEKSFKQQRNLEEHMAIHTGLQLYNCPHCPKECRSRSNMYVHIKQRHADEWLKAKMARSHNPQFKPLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00916542;
90% Identity: iTF_00920065; iTF_00917447; iTF_00914724; iTF_00915608; iTF_00919293; iTF_00916542;
80% Identity: -